BAC Information

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BAC

Clone NameMSMg01-217O16
Chromosome18 (Build37)
Map Location 26,344,588 - 26,344,894
singlet/doubletsinglet
Overlap genenone
Upstream geneAW554918, Brunol4, LOC100041241, LOC665916, LOC100041263, LOC100041274
Downstream geneEG665977
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-217O16.T7 (MSMg01no217_o16.b1)MSMg01-217O16.TJ (MSMg01no217_o16.g1)
ACCAG397273AG397274
length1,281727
length of high quality
(start - end)
418 (43 - 460)307 (386 - 692)
definitionCHROMAT_FILE: MSMg01no217_o16.b1 PHD_FILE: MSMg01no217_o16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:45:46 2005CHROMAT_FILE: MSMg01no217_o16.g1 PHD_FILE: MSMg01no217_o16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:45:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNGGGGACATTGGGCGCTAXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCTACAGCTGATAGCCAACTATAGTAAAGTGCCTGAATACAAAAATAAA
TGTAAAGAAATCAGTAGTCCTAGTTTACGCAAATGATAAATGGCCTATGA
AAAGAATTAGGGAAATAACTCCCTTCACAATAACTCCACACAATATAAAA
TATCTTGGTATAATTGCAACCAGGCAGGTGAAAGACTTGTATGACTAGAA
CTTCAAGTTTCTGAACAAAAAATTAAAATTAATATCAGAAATGGAAAATC
TCCCATTCTCATGAAGTGGTAAGTTTTACATAATAAAAATGGCCATCTTA
CCAAAAGCAATCTGAAGATTCAATGCAATTCCCATCTAAATTCCAACAGA
GTTCCTTACAGACTGTGAAAGAGTGAGATTTCTATTCTAATAGCAACCAA
CTTTTATTTCTGTACCCCGCCAACAGCCATTTAACCACTATTCAAGAAAT
GTATTTGAATGGGTCAAAGTCCAGTATCATACTGTAGGTTCAAATCTAAA
GAACTGAGACTTGCTCAAAGTATGCTCACAGCTTGTTCCCCCTTCCCCAT
TAAACTTCAGGTATTTCTGTTTCTGAGGAATCCACCCTAACCTTGCCTTT
CATCATCCGTATTCAAGGGTCTTACATGTGAGACCTAACTGCGTGCCCAT
AACAATCTTATATGATAACAGTAATATAACTAGTATTTCTATTTTCTGAT
TAATAAAAATGGAAGCAGAAATTTACATATTTCTTCCAGAGCAAGAAAAT
GAAGTAGCAACCTAATGTCAAATAAAATGATCAAGATAAGTAGACCAAAA
CACCTAATGCAGTTTCAGAGGAAGGGCACTTCCATCTCCTGTCCCGCCTA
TCCCCAATCCACCCAGCTTTGTTCTATCTGTGAAGCATAAATAATGACCA
TGTCTATTCTCAGAAGCCATACACAATCCTCCAAAACAACTTGGCTAAGG
CCTTACCTTACCAAAGGGACATTTTCCTGGGCGAAAGAATGGCCTCTTAT
ATGAAAAAAAATCTTGTCATTGAATCTGTGTCCGTAATTAAACAAAATGG
CATTCCCTAATTTAAAGGTGTTTGTTTTTGGCTTTGGGGCTTTGTTTCGT
TTCTGGAATGGAAATGTAAACCCCGTGTTTCCTTGCTCTAACACTATTTT
TCTCCTGTAAATTATTATATCATCTCTTCTCTCAATAGTGTGTTCTTCCA
CAATACATAAACTTATAATTCTCTCCCTCCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTGTAATTTTCCAATTCATAACGAATGCATTCAA
TTAAAGTAATTTATTTCCCAAATGATTACTATGCACCTTCAAGGTATAAG
GATATTCATAAGGACAAGAAGAGAGCAAAGAAAGCATTGTTCCTTTATTA
CATTAAGGAACTTAAGTTTTATTTGGTCGAAGATAAATGATAAATAAATA
CATATAATTGCATGTTGTATAGTATACAACGTCATGTAGGTTACTGCAGT
ACTGTATTGATTAGCCTATATATACACAGTATATGAGAATATATAACATA
TAATGGTTTTTTTCTCATACACACCCACTGAAGAATACAGGGATGAAAAA
TGAAGCTAAGGTGCCTATTTTGCAAAGAAACATTAAGGAATGGCTTTCTG
CTAAGAAACAGAGCTTGCTTTGGCTTTTTCGTACAGGCTTTTGACTTCAC
TTAGTGATATTTTCTTTGACATACACATGATCTCTTTTTGCAAATTTGGC
ACAAAAATATACACAAAGAAGGAACCTTGTGAATAACTGAGAGGAGGAAG
GGTATTCCAAGAAGAAATAAACAGAAGAACAAAAATTGCAAATTCTCAAA
AATTGCAAAGTGTTTTGTTTTGTTCTGTTTTGTTTTGTTGTGTTTTGTTT
TCTGTAAGAAGCCAGTGTAAAGCAAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no217_o16.g1 MSMg01no217_o16.g1 CHROMAT_FILE:
MSMg01no217_o16.g1 PHD_FILE: MSMg01no217_o16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:45:46 2005
         (307 letters)



>mm_chr18_26344388_26345094
          Length = 707

 Score =  555 bits (287), Expect = e-162
 Identities = 302/307 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tacagggatgaaaaatgaagctaaggtgcctattttgcaaagaaacattaaggaatggct 60
           ||||||| |||||||||||||||||||| |||||||||||||   |||||||||||||||
Sbjct: 201 tacagggctgaaaaatgaagctaaggtgtctattttgcaaagggtcattaaggaatggct 260

                                                                       
Query: 61  ttctgctaagaaacagagcttgctttggctttttcgtacaggcttttgacttcacttagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttctgctaagaaacagagcttgctttggctttttcgtacaggcttttgacttcacttagt 320

                                                                       
Query: 121 gatattttctttgacatacacatgatctctttttgcaaatttggcacaaaaatatacaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatattttctttgacatacacatgatctctttttgcaaatttggcacaaaaatatacaca 380

                                                                       
Query: 181 aagaaggaaccttgtgaataactgagaggaggaagggtattccaagaagaaataaacaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagaaggaaccttgtgaataactgagaggaggaagggtattccaagaagaaataaacaga 440

                                                                       
Query: 241 agaacaaaaattgcaaattctcaaaaattgcaaagtgttttgttttgttctgttttgttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agaacaaaaattgcaaattctcaaaaattgcaaagtgttttgttttgttctgttttgttt 500

                  
Query: 301 tgttgtg 307
           |||||||
Sbjct: 501 tgttgtg 507


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 307
Length of database: 707
Length adjustment: 9
Effective length of query: 298
Effective length of database: 698
Effective search space:   208004
Effective search space used:   208004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)