BAC Information

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BAC

Clone NameMSMg01-218M18
Chromosome18 (Build37)
Map Location 84,742,591 - 84,900,146
singlet/doubletdoublet
Overlap geneZfp407, Cndp1, EG640234, Cndp2, LOC100039711, LOC100039725, B230399E16Rik
Upstream geneTshz1, Zadh2, LOC669856
Downstream geneCyb5, Fbxo15, 1700034H14Rik, LOC100039765, LOC665382
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-218M18.T7 (MSMg01no218_m18.b1)MSMg01-218M18.TJ (MSMg01no218_m18.g1)
ACCAG397834AG397835
length742724
length of high quality
(start - end)
316 (50 - 365)285 (75 - 359)
definitionCHROMAT_FILE: MSMg01no218_m18.b1 PHD_FILE: MSMg01no218_m18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:46:55 2005CHROMAT_FILE: MSMg01no218_m18.g1 PHD_FILE: MSMg01no218_m18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:46:55 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,742,591 - 84,742,902)(84,899,862 - 84,900,146)
sequence
ACATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCACCCAAATTAAACCAGAATTTTATTTCTATTCCAGAGGA
AAACCACGTAAATATTTCAATATCTAATTCAATTTTGCGTGCAAGTTAAA
AATCCAAACATTTGTTTAGTGCTTAATATAGAATTAAAACAATATTGAAA
TGCCATAATGATGAGGATCAAAGCTCAGTGACAAAACTGAGCAGATCCAC
CAGCATCCTAAACCCCCATCCTTAGACGACTGCCTATGGAGAGGGACTGC
CGCAGTCTAATCACTTGGTTAGCAAATACTACTCTATCAGCCCACCCCTC
ACACTGCCCTTGGCTATTCCTTCTCTATTCGAGNANTCCTTTCTAAATAC
ACTAAAACAACCCAGTCATCACCCTAACTAAAAAATAACTTTATATTGGC
TATCCCTGACAAATGCTTCACACTCGGAAAAATTCTCCACAAAAAGTTAA
AATTTAATCTATCTTTTTTAAAGGCATTTTTAAAATCAATACTTTGGTAA
TATTTCCATCTAATTTTTAAGAAAAGAAATTATTGGGCCAGAAATAAAAG
AGATAAGGTAAAGGCGTGATGACTGAGTAAAAAATGAGAAAACTTCAGTG
TCATTAAAATCCCGAGTTAGCAGTGTCTCATGGTATCTGAACAGGGTGAT
TTATTATCAGTGTAACTAATCACCATGATACCATCTCTTACA
AATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACTTCCTCCTACACAGACCAGAATCT
CTTCTCTTACCACAAACATGGCCCCCTGCTTCCACTCACCGTAAAGTCCC
TCTTGATGGCGAAGTTCTCAGGTTTGACATCACAGAGGTGGAGCCGGTGG
GAAAAGTCACTGTCGAAATGGCTCACCATGTCCAGGAAGCTGAGGGCAAT
GTGGCTAATAGCCTGTGCTTGGCCAGCATCATCCAGTGGGAAGAGAGCCT
TGTGGTGAGGGCTACCAGCATTCTAGTACTCCACTGCATAAAAGTGACCG
CAGGATCCCTGTTCTGTTAGCCATGNGCCGGNCCCGATCTGGAAGCAGGC
TGAAGTATACGTATTCCTCCCGCCGGAGAAATAACCACGCACTGGCCAGC
TGTTGCCGCCAGCCAGGGCCCTGCCTGGCAGGCCATAGCGGGGCTATGCT
GTTGTTGGGCAGCTCCAAGCCTAGCGTGTTCTTGACCTCCCCGGCCACCA
TCAGGAGCAGCTCAGCCTCAGGGATGCCGGGGGCACCTGCCCCTGCTTCC
TCCTCCAGCAGAGTGAGGGGCGGGAAGCTGGACAAGGCCTCCTTCTTGTA
TTTGAGGACAACGGTCCGGCCACGCCACTGAGCCTGCAGCACCTTCTTAC
CCCGCTCGTAATACAGGTAGCGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no218_m18.b1 MSMg01no218_m18.b1 CHROMAT_FILE:
MSMg01no218_m18.b1 PHD_FILE: MSMg01no218_m18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:46:55 2005
         (316 letters)



>mm_chr18_84742387_84743102
          Length = 716

 Score =  588 bits (304), Expect = e-172
 Identities = 310/312 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcacccaaattaaaccagaattttatttctattccagaggaaaaccacgtaaat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcacccaaattaaaccagaattttatttctattccagaggaaaaccacgtaaat 264

                                                                       
Query: 65  atttcaatatctaattcaattttgcgtgcaagttaaaaatccaaacatttgtttagtgct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atttcaatatctaattcaattttgcgtgcaagttaaaaatccaaacatttgtttagtgct 324

                                                                       
Query: 125 taatatagaattaaaacaatattgaaatgccataatgatgaggatcaaagctcagtgaca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 taatatagaattaaaacaatattgaaatgccataatgatgaggatcaaagctcagtgaca 384

                                                                       
Query: 185 aaactgagcagatccaccagcatcctaaacccccatccttagacgactgcctatggagag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaactgagcagatccaccagcatcctaaacccccatccttagacgactgcctatggagag 444

                                                                       
Query: 245 ggactgccgcagtctaatcacttggttagcaaatactactctatcagcccacccctcaca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 445 ggactgccgcagtctaatcacttggttagcaaatactactctatcagcccagccctcaca 504

                       
Query: 305 ctgcccttggct 316
           | ||||||||||
Sbjct: 505 ccgcccttggct 516


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no218_m18.g1 MSMg01no218_m18.g1 CHROMAT_FILE:
MSMg01no218_m18.g1 PHD_FILE: MSMg01no218_m18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:46:55 2005
         (285 letters)



>mm_chr18_84899662_84900346
          Length = 685

 Score =  513 bits (265), Expect = e-150
 Identities = 280/285 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   acttcctcctacacagaccagaatctcttctcttaccacaaacatggccccctgcttcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 485 acttcctcctacacagaccagaatctcttctcttaccacaaacatggcagcctgcttcca 426

                                                                       
Query: 61  ctcaccgtaaagtccctcttgatggcgaagttctcaggtttgacatcacagaggtggagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 ctcaccgtaaagtccctcttgatggcgaagttctcaggtttgacatcacagaggtggagc 366

                                                                       
Query: 121 cggtgggaaaagtcactgtcgaaatggctcaccatgtccaggaagctgagggcaatgtgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 cggtgggaaaagtcactgtcgaaatggctcaccatgtccaggaagctgagggcaatgtgg 306

                                                                       
Query: 181 ctaatagcctgtgcttggccagcatcatccagtgggaagagagccttgtggtgagggcta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ctaatagcctgtgcttggccagcatcatccagtgggaagagagccttgtggtgagggcta 246

                                                        
Query: 241 ccagcattctagtactccactgcataaaagtgaccgcaggatccc 285
           ||||||  | |||||||||||||||||||||||||||||||||||
Sbjct: 245 ccagcagccaagtactccactgcataaaagtgaccgcaggatccc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)