BAC Information

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BAC

Clone NameMSMg01-231K11
Chromosome18 (Build37)
Map Location 86,957,135 - 86,957,476
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC545269, LOC545270, LOC665402, Neto1, Cbln2, LOC100039872, LOC100039881, LOC665437
Downstream geneLOC435580, LOC546719, LOC383318, Ppia-ps18_1039.1, LOC329008
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-231K11.T7 (MSMg01no231_k11.b1)MSMg01-231K11.TJ (MSMg01no231_k11.g1)
ACCAG398403AG398404
length721724
length of high quality
(start - end)
317 (45 - 361)342 (383 - 724)
definitionCHROMAT_FILE: MSMg01no231_k11.b1 PHD_FILE: MSMg01no231_k11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:00 2005CHROMAT_FILE: MSMg01no231_k11.g1 PHD_FILE: MSMg01no231_k11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTGTTCAGTTCTGAGCCCCAATTTTAATGGGGTTATTTGATTTTC
TGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTA
TCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTT
TGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTA
GGTCCCATTTGTCAATTCTCGATCTTCCAGCACAAGCCATTGCTGTTCTG
TTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTTT
CTCCTCTATTTGTTTCACCCCCCCCCGCCCTCTATGTGAAGTTCCTTGAT
CCACTTAGATTTGACCTCACCACAAGGAGATAAGTATGGATCGATTCGCA
TTCTTCTACACGATAACAAACAGTTGTGCCAGCACCAATTGTTGAAAATG
CTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTG
ACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCGATTCTATTCCATTGGT
CTACTTGTCTGTCTCTATACCAGTACCATGCAGTTTTTATCACAATTGCT
CTGTAGTAAAGCTTTACGTCTGGCATGGTGATTCCGCCAGAAGTTCTTTT
ATCCTTGAGAAGACTTTTTGC
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATGAGGCTTTGGTATTTTCAGCAC
AGTAAGATCAAACATTAATCAATCACATCAATCAATCAATCAACCAATCA
ATCTTTCACTTATCACTGAGGCAAAATTCATGACTAGTTTTAATGACAAA
AATATGTAATTTAAAAATTTTCAACATTATAATCTAACATGAGCATGGTG
GGTCCTGATACTTTAGGAATCTTCACAGGACAATTATTTTCTTGACATTT
CTACTTCTGGAAAACTGCTTGTATTATCTATTGGTTCTACACAATGATGA
CATTTGCTCTTCTTTTTATAGCCCCCTCTCTCTTTTACTGTGTGTGACCC
TGGACCCCCCAAGAAAAATACACAAGTCCTCCTCCATCCAATAAGATAAC
TTAGTTAATAATTTTAGCTTAATTTGAAGGTTCAATTTTGTTATGTCTTA
TAAATAGCATAACCAAAGGAGACAGGATGCTGAAAGAAGAGCACACATAT
ATGATTCATCATTCTGGTTACCTTAGCTGCCCTAAAATGTGATTGATTTG
CCTTCAACTCAGACTGTTTGTGCTGAACCCCAGTGCTACCACATAAGAGG
TGTGTATGAGTAGCAAGTCAGTGGTACTCAGTTTAACATCTGACAAGTGG
GCATTAAAACAGAAACTTCCTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no231_k11.g1 MSMg01no231_k11.g1 CHROMAT_FILE:
MSMg01no231_k11.g1 PHD_FILE: MSMg01no231_k11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:00 2005
         (342 letters)



>mm_chr18_86956935_86957676
          Length = 742

 Score =  607 bits (314), Expect = e-178
 Identities = 335/342 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttactgtgtgtgaccctggaccccccaagaaaaatacacaagtcctcctccatccaat 60
           ||||||| ||||||||||||||||| |||||||||||| | |||||||||||||||||||
Sbjct: 201 ttttactctgtgtgaccctggacccaccaagaaaaatagagaagtcctcctccatccaat 260

                                                                       
Query: 61  aagataacttagttaataattttagcttaatttgaaggttcaattttgttatgtcttata 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagatcacttagttaataattttagcttaatttgaaggttcaattttgttatgtcttata 320

                                                                       
Query: 121 aatagcataaccaaaggagacaggatgctgaaagaagagcacacatatatgattcatcat 180
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 321 aatagcataaccaaaggagacaggatgctgaaagaagagcacgcatatatgattcatcat 380

                                                                       
Query: 181 tctggttaccttagctgccctaaaatgtgattgatttgccttcaactcagactgtttgtg 240
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctggttaccttagctgccctgaaatgtgattgatttgccttcaactcagactgtttgtg 440

                                                                       
Query: 241 ctgaaccccagtgctaccacataagaggtgtgtatgagtagcaagtcagtggtactcagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgaaccccagtgctaccacataagaggtgtgtatgagtagcaagtcagtggtactcagt 500

                                                     
Query: 301 ttaacatctgacaagtgggcattaaaacagaaacttcctctg 342
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttaacatctgacaagtgggcattaaaacagaaacttcctctg 542


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 742
Length adjustment: 9
Effective length of query: 333
Effective length of database: 733
Effective search space:   244089
Effective search space used:   244089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)