Query= MSMg01no232_h21.b1 MSMg01no232_h21.b1 CHROMAT_FILE:
MSMg01no232_h21.b1 PHD_FILE: MSMg01no232_h21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:00 2005
(246 letters)
>mm_chr18_87188258_87188904
Length = 647
Score = 424 bits (219), Expect = e-123
Identities = 240/247 (97%), Gaps = 1/247 (0%)
Strand = Plus / Plus
Query: 1 agtgcatttcaaaagaaaagaaaacacccacacctccacaacttttccc-actatttgaa 59
|||||||||||||||||||||||||||||||||| ||||||| | ||| ||||||||||
Sbjct: 201 agtgcatttcaaaagaaaagaaaacacccacacccccacaaccctcccccactatttgaa 260
Query: 60 aagccaatccctactgtcagggggcatcaggagaatgtgataactagtctttggaaaggt 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagccaatccctactgtcagggggcatcaggagaatgtgataactagtctttggaaaggt 320
Query: 120 cttgggccttcataaacctcccaatcagagttcagctttccacgaagaccacaagagaac 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttgggccttcataaacctcccaatcagagttcagctttccacgaagaccacaagagaag 380
Query: 180 atgttgtacagtgtacaatacgaaatctggaaaggggaagggagatggaggtgggacaat 239
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggttgtacagtgtacaatacgaaatctggaaaggggaagggagatggaggtgggacaat 440
Query: 240 agctttt 246
|||||||
Sbjct: 441 agctttt 447
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 647
Length adjustment: 9
Effective length of query: 237
Effective length of database: 638
Effective search space: 151206
Effective search space used: 151206
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no232_h21.g1 MSMg01no232_h21.g1 CHROMAT_FILE:
MSMg01no232_h21.g1 PHD_FILE: MSMg01no232_h21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:00 2005
(665 letters)
>mm_chr18_87293524_87294587
Length = 1064
Score = 1222 bits (632), Expect = 0.0
Identities = 656/664 (98%), Gaps = 1/664 (0%)
Strand = Plus / Minus
Query: 1 aatacatgagtatgtggtaaagacttcatactcaagctgaaactacttcctttagctttt 60
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 863 aatacatgagtatgtggtgaagacttcatactcaagctgaaactacttcctttagctttt 804
Query: 61 cctgttaatcccttaacatgctctctaaaggaaacgagaaaagaaatcaaaggtttaatg 120
||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 803 cctgttaattccttaacatgctctctaaaggaaacgagaaaagaaataaaaggtttaatg 744
Query: 121 gtgtttttgtcctcagaaaatccacaacacgatttggggtgcagtgattgcttcatgagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 gtgtttttgtcctcagaaaatccacaacacgatttggggtgcagtgattgcttcatgagt 684
Query: 181 atttattgaattacaaaatggattaaggagtgcttgtatatattaatcttgatttgttag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 atttattgaattacaaaatggattaaggagtgcttgtatatattaatcttgatttgttag 624
Query: 241 acaacacatattttaagacacatataaaaaaaccataaatatctagaccaaaacagaaac 300
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 623 acaacacatattttaagacacatataaaaaaa-cataaatatctagaccaaaacagaaac 565
Query: 301 tgttgaaggcttgacaaaatgtaagccaataatgaaataatgattacccataaaaatagg 360
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 564 tgttgaaggcttgacaaaatgtaagccaataatgaaataatgattacctataaaaatagg 505
Query: 361 gggtgaaatgttttctgattgtgttaaaagctgaacaagttaatctgttaaacacctgca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gggtgaaatgttttctgattgtgttaaaagctgaacaagttaatctgttaaacacctgca 445
Query: 421 gaaaatgcttcagccaaaagacatgcgaattgaccatataatattagtcagcaagagtgc 480
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 444 gaaaatgcttcatccaaaagacatgcgaattgactatataatattagtcagcaagagtgc 385
Query: 481 gaaatggtggaatacctgtactactgcctgtcctacattttctgtcacctgaggatagta 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gaaatggtggaatacctgtactactgcctgtcctacattttctgtcacctgaggatagta 325
Query: 541 cataaaaacttttcagaattagagaatgattaaatgtgagcatatatttagtgaagaatt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cataaaaacttttcagaattagagaatgattaaatgtgagcatatatttagtgaagaatt 265
Query: 601 ttaaaaatttagaaacatgatttaggtattcagtctctggacatacagaacacatggata 660
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 264 ttaaaaatttagaaacatgatttaggtattcggtctctggacatacagaacacatggata 205
Query: 661 cagt 664
||||
Sbjct: 204 cagt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1064
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1054
Effective search space: 690370
Effective search space used: 690370
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
