BAC Information

Click to search

BAC

Clone NameMSMg01-232J19
Chromosome18 (Build37)
Map Location 87,005,039 - 87,005,270
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC545269, LOC545270, LOC665402, Neto1, Cbln2, LOC100039872, LOC100039881, LOC665437
Downstream geneLOC435580, LOC546719, LOC383318, Ppia-ps18_1039.1, LOC329008
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-232J19.T7 (MSMg01no232_j19.b1)MSMg01-232J19.TJ (MSMg01no232_j19.g1)
ACCAG399062AG399063
length736729
length of high quality
(start - end)
---233 (127 - 359)
definitionCHROMAT_FILE: MSMg01no232_j19.b1 PHD_FILE: MSMg01no232_j19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:49:08 2005CHROMAT_FILE: MSMg01no232_j19.g1 PHD_FILE: MSMg01no232_j19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:49:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATGCATGCTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
TCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTCCCGAAAATCAAACCGAACCAAGGAGGCCAGGGAGA
AATTCATTCATTCTGAGTTTTAGCGCAATTTGTGTTCTTGCTTGATTTCT
CATGAACCTTTCAAACATAATTCATAGGGGGATGGAAGCCTGATACATAT
ATGATCTGAGCTTTATCTTGGGGCACCAAATGTAATTGGCTCCCAATAGG
GGAACAACAATAGAACAAAGAAATTACTGTGCCCAAGTCTCCTTTGGTGA
ACTAATCACTTTGACTAATGCTATTTTTGTCAACTTAAAAAAAACCACAT
GACTAAAGAATGTATATTTGTTCCCCCCCACCTTCAAGTAGTAACAAGGT
CTCCTAAGACCCTCTCTACCCCCCCGAAAAAAATAAAAGCCTTAGTCAGG
ATTTCTATTCCTGCACAAACATCATGACCAAGAAGCAAGTTGGGGAGGAA
AGGGTTTATTCAGCTTATACTTTCACATTGTTGTTTATCACCCAAGAAAG
TCAGGACTGGAACTCAAGCAGGTCAGGAAGCAGGAGGTGATGCAGAGGCC
ATGGAAGGATGTTACTTATTGGCTTGCTTCCCCCTGGCTTGCTCAGCTTG
CTTTCTTTTCTTGCTCAGTCCAGGGATGGCACCATCCACAATGGGCCCTC
ACACCCTTGACCACTAATTGAGAAAATGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no232_j19.g1 MSMg01no232_j19.g1 CHROMAT_FILE:
MSMg01no232_j19.g1 PHD_FILE: MSMg01no232_j19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:08 2005
         (233 letters)



>mm_chr18_87004839_87005470
          Length = 632

 Score =  412 bits (213), Expect = e-120
 Identities = 228/235 (97%), Gaps = 5/235 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatttgtgttcttgcttgatttctcatgaacctttcaaacataattcatagggggatgga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 aatttgtgttcttgcttgatttctcatgaacctttcaaacataattcatagggggatgga 373

                                                                       
Query: 61  agcctgatacatatatgatctgagctttatcttggggcaccaaatgtaattggctcccaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 agcctgatacatatatgatctgagctttatcttggggcaccaaatgtaattggctcccaa 313

                                                                       
Query: 121 taggggaacaacaatagaacaaagaaattactgtgcccaagtctcctttggtgaactaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 taggggaacaacaatagaacaaagaaattactgtgcccaagtctcctttggtgaactaat 253

                                                                  
Query: 181 cactttgactaatgct--atttttgtcaacttaaaaaaaaccacatgactaaaga 233
           ||||||||||||||||  |   | ||||||||||||| |||||||||||||||||
Sbjct: 252 cactttgactaatgctaca---tggtcaacttaaaaacaaccacatgactaaaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 632
Length adjustment: 9
Effective length of query: 224
Effective length of database: 623
Effective search space:   139552
Effective search space used:   139552
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)