BAC Information

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BAC

Clone NameMSMg01-233L14
Chromosome18 (Build37)
Map Location 10,946,795 - 10,947,077
singlet/doubletsinglet
Overlap genenone
Upstream geneThoc1, Usp14, Rock1, LOC100039978, LOC635344, LOC435554, AK220484, LOC621832, Esco1, Snrpd1, LOC100039880, Abhd3, Mib1, LOC665296
Downstream gene1010001N08Rik, Gata6, LOC665310, LOC100040148, Rbbp8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-233L14.T7 (MSMg01no233_l14.b1)MSMg01-233L14.TJ (MSMg01no233_l14.g1)
ACCAG399833AG399834
length679710
length of high quality
(start - end)
322 (4 - 325)286 (83 - 368)
definitionCHROMAT_FILE: MSMg01no233_l14.b1 PHD_FILE: MSMg01no233_l14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:50:29 2005CHROMAT_FILE: MSMg01no233_l14.g1 PHD_FILE: MSMg01no233_l14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:50:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGATCCGCGGAATTCTTTGTAATTCTTGGATTTTTCAGAAAATAATGC
TAACAGTGACACCTTCAACCAGCTACTTTGTGCCACGATGACATTAAGAA
AAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAA
AGGGGCTAGAGAAGATGGCTCAGTGGGTAACGGTGCTTGTGGCCTGATGA
CATGAGTTCAGTCCCCAGGACCCAGTTAGAGAAGGAAAGAGGTGACTTCT
GCGACTTGTTCTCTGACCTCTACAGTTTACAAGGTACACACACACCCACA
TGCATATATAGATAAATATTTTTAATTATTATTGACAACGCCCACCCCTA
TATAACAAAATGGCTTTGGTTAAAGCTACCTGACCCCCCCATTCCTTTTT
CTTCAATTAATTTTGGGCAGCTGCGACTGTGGTTGCCATATACTACTTTT
ATTGGAAAACACTACATGTTTAAATAAACATATGTATCAATTGTGATAGC
ATGTTGGCATGCTTTGAGGCTCATTAAAGTTAGCTCTCCTAGACTTTGGG
CCTTTATTCTTATTTTACAAAAGCAGATATGGCACATGATTATTTCCATA
TGCTAACATTTTCCCTTTTTAAAGATACAGCGTCCAATATTTAACAAATG
TATTAACATTTTCCTTTTCTTTGACCATT
NNCCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGACCTTCTGTGTTGGG
AAAACTGGCTTTCCCGTCTCATCACGTCCATTTTTCATTCTCCCACTAGC
AACTAAAGACCCTTTCTTTGGAGATTTTCCACAAGTTATTTCATCTACCC
AGAATGCCTTGTCTCTTCTAACACCTTGTCTTTCAATGTCTGACTGGGAG
TGTTCTCTCTCAGCACACACTCCAAACACAGCCTCCGCCCCCATCACACC
CAGCCTTACATTCCTGGAAGGGTCATGTGCACCAAATTCACTATGAGTAA
TGATTCAGACATATCTCTCATTCACATGCCTATCACGGATTGCATTTAAA
TACTGTGTCAGTCTTACAAGGCAAGATAAGCATCCCATAAAGGGATGCTG
GTTATGACGTTGCATGCCTGTAGTCCCAGCAGTAAGGCACATTGCCTTAA
GTTTGAAGGTAGTCTGAGCTACAGTGAGACCCTGCCTCAAAACAGGAGCA
GAGGATCTTGAGAGGTTGCTCAAGAAGTTAACTCAGAGGTTAAGAGTACT
TATCATTCTTCCAAAGGATTCAAGTTCGGCTCCCAGCTGGACCACAAAAC
AGGCATACTTTTTTTTTGCCTCTGAAGGTACACATACACACATTACATAC
TCAAGGACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no233_l14.g1 MSMg01no233_l14.g1 CHROMAT_FILE:
MSMg01no233_l14.g1 PHD_FILE: MSMg01no233_l14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:30 2005
         (286 letters)



>mm_chr18_10946595_10947280
          Length = 686

 Score =  540 bits (279), Expect = e-158
 Identities = 282/283 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgaccttctgtgttgggaaaactggctttcccgtctcatcacgtccatttttcattctc 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 483 ttgaccttctgtgttgggaaaactggctttcccgtctcatcacgtctatttttcattctc 424

                                                                       
Query: 61  ccactagcaactaaagaccctttctttggagattttccacaagttatttcatctacccag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 ccactagcaactaaagaccctttctttggagattttccacaagttatttcatctacccag 364

                                                                       
Query: 121 aatgccttgtctcttctaacaccttgtctttcaatgtctgactgggagtgttctctctca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 aatgccttgtctcttctaacaccttgtctttcaatgtctgactgggagtgttctctctca 304

                                                                       
Query: 181 gcacacactccaaacacagcctccgcccccatcacacccagccttacattcctggaaggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 gcacacactccaaacacagcctccgcccccatcacacccagccttacattcctggaaggg 244

                                                      
Query: 241 tcatgtgcaccaaattcactatgagtaatgattcagacatatc 283
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 tcatgtgcaccaaattcactatgagtaatgattcagacatatc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)