Query= MSMg01no260_b20.b1 MSMg01no260_b20.b1 CHROMAT_FILE:
MSMg01no260_b20.b1 PHD_FILE: MSMg01no260_b20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:06 2005
(688 letters)
>mm_chr18_32583423_32584509
Length = 1087
Score = 758 bits (392), Expect = 0.0
Identities = 425/436 (97%), Gaps = 1/436 (0%)
Strand = Plus / Minus
Query: 4 ggaattccatgtccgtgtccatggacagagtagaagtgtgaagaccagagcatgcttctg 63
|||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 638 ggaattccatgtccgtatgcatgggcagagtagaagtgtgaagaccagagcatgcttctg 579
Query: 64 tatggttcatagggggcttgtcttggaagcaagggcgcagcagcgagaaccaacctcctc 123
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 578 tatggttcatagggggcttgtcttggaagcaagggtgcagcagcgagaaccaatctcctc 519
Query: 124 cccacctgggcctcatagcacaagcaagccagacatcctagaggcaaagtgagtctctta 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 cccacctgggcctcatagcacaagcaagccagacatcctagaggcaaagtgagtctctta 459
Query: 184 catcagacagcagcctcttcactcagcctactccctagtctgctccgcagacctctgtag 243
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 catcagacaggagcctcttcactcagcctactccctagtctgctccgcagacctctgtag 399
Query: 244 catctccccacctgtcccttcccaactgcacagatgtgaccacaacccaggagcccgccc 303
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 398 catct-cccacctgtcccttcccaactgcacagatgtgaccacaacccaggagcccaccc 340
Query: 304 gcccgcccgctacacttcccttcccatagttcctcagcttagtgcacaccctggagaaac 363
||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 gcccgcccgttacactttccttcccatagttcctcagcttagtgcacaccctggagaaac 280
Query: 364 atccaaacatagcaaagctggcatggatggaccggtggcttcaccgcagagaggtgatag 423
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 279 atccaaacatagcaaagctggcatggatggaccggtggcttcactgcagagaggtgatag 220
Query: 424 ttgacagagcgccaag 439
||||||||||||||||
Sbjct: 219 ttgacagagcgccaag 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 688
Length of database: 1087
Length adjustment: 10
Effective length of query: 678
Effective length of database: 1077
Effective search space: 730206
Effective search space used: 730206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no260_b20.g1 MSMg01no260_b20.g1 CHROMAT_FILE:
MSMg01no260_b20.g1 PHD_FILE: MSMg01no260_b20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:06 2005
(670 letters)
>mm_chr18_32388525_32389594
Length = 1070
Score = 1288 bits (666), Expect = 0.0
Identities = 669/670 (99%)
Strand = Plus / Plus
Query: 1 agctaaaacacagacgactgctcattaaatgtatgagcagtagaagagacaacatttgcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agctaaaacacagacgactgctcattaaatgtatgagcagtagaagagacaacatttgcc 260
Query: 61 agtcagtagaaaaatgtggaaaaacagaattagtgttatgtagtatattttaaacattat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtcagtagaaaaatgtggaaaaacagaattagtgttatgtagtatattttaaacattat 320
Query: 121 ttacttgaggtgaaagtcccaaaatggagggaactgagaaataataaaaattgtgtttat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttacttgaggtgaaagtcccaaaatggagggaactgagaaataataaaaattgtgtttat 380
Query: 181 atattagcttcctatttctaacccctgatttcccgttagataacagtctttagctcaaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atattagcttcctatttctaacccctgatttcccgttagataacagtctttagctcaaat 440
Query: 241 acccacctgttaacgctcctgtcatgaagtcaaaaccttgttcttggggtcttggagtac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acccacctgttaacgctcctgtcatgaagtcaaaaccttgttcttggggtcttggagtac 500
Query: 301 taaactagaggctcctcagaagagtaaacatcagggaaaacaatgaggtttgtggtgggg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taaactagaggctcctcagaagagtaaacatcagggaaaacaatgaggtttgtggtgggg 560
Query: 361 agtcattttccttcacttggcatttggcaatgcctggagacactttgttgccataactgg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agtcattttccttcacttggcatttggcaatgcctggagacactttgttgccataactgg 620
Query: 421 caaggtactactagcatccggtgggcaggggttgcaggtgctgctaagtagactgtagtg 480
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 caaggtactactagcatccagtgggcaggggttgcaggtgctgctaagtagactgtagtg 680
Query: 481 cacaaggactccccacccaggagttctcctgccacatgacaaaagtgcctaggatggaaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cacaaggactccccacccaggagttctcctgccacatgacaaaagtgcctaggatggaaa 740
Query: 541 ccaagcagccattcacagagcagtcagagcagcggtcagagggacggtgtagggcggatg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ccaagcagccattcacagagcagtcagagcagcggtcagagggacggtgtagggcggatg 800
Query: 601 agggcttcataagagcagacgatgagtcaggtgagcagtctcagctcataacagatgatg 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 agggcttcataagagcagacgatgagtcaggtgagcagtctcagctcataacagatgatg 860
Query: 661 gtcctctgac 670
||||||||||
Sbjct: 861 gtcctctgac 870
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1070
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1060
Effective search space: 699600
Effective search space used: 699600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
