BAC Information

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BAC

Clone NameMSMg01-260G17
Chromosome18 (Build37)
Map Location 28,150,030 - 28,150,501
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665977, EG665646
Downstream geneEG271505, EG625997, BC051408
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-260G17.T7 (MSMg01no260_g17.b1)MSMg01-260G17.TJ (MSMg01no260_g17.g1)
ACCAG403090AG403091
length748854
length of high quality
(start - end)
478 (47 - 524)144 (77 - 220)
definitionCHROMAT_FILE: MSMg01no260_g17.b1 PHD_FILE: MSMg01no260_g17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:56:30 2005CHROMAT_FILE: MSMg01no260_g17.g1 PHD_FILE: MSMg01no260_g17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:56:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTGCTGTCTTCCTGAGCTTTTAGGGAAAATAAGAGTGTAGAAAGC
TACTTTGTCCATAAGTAACATGTTTATGTATTATTCACAGTAGCAAATAA
TTGCAAAATGTCAACATTTCATTTTCCTCTTAAAAGCTTCTTTTGATTAG
TGACCTAATTAACCATTAAGGGAAAAAAAGCTTTTTAACTGTAAATATGA
AAGGAGAAAGTGTTTCCCAGTAGCAATTTGTGATCTTAAAATGTCACAGG
CACGTTCATCATGGAGGAGCAACCAACTCAACACTTTTCAAAATGATGTG
GTGTCAGAAGCATATGGCATGAATTTGTTCAGCTTTTTTTTTTCATTTTT
ATTTTGTATTTATTCTGGAACAAGCAATGCAAATATAGATATGGTTGCCC
GAGAGATTTTTCTTTGCTTTTTGAAAACCCTTCATTATTTTCCCCAACAG
CCTAGGAAAGGCTGTTTTTAATCTTTTTAATTTGAGGGCATATTCTTCCC
ATATAATGACACATTTCCTCTTCTCGTTCTCATACATACACATACATACA
CACAGATTCACTCTCTCAGACTCCCTCTCTCATATGTCCTAAATCCAAGT
TTGCTTCTATACAATACATGCTATGGAAAGTTTTAATTCTAAGCAAGGGT
ATCCACACTGTCATGATCTTCCTTGTATAATAGATACAAGCTTTTTTA
NACGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTGTATACATAGAGATTCATCCTC
ACCCCCACATACAAATACTAAAATAGATGGTTGACAGATTAGAAAGATAG
ATGAAAGGTATGTGTGTGTGTGTGTGTGCACGTGTGTGTGTGTGTTTGTG
TGTGTGTGTGTGTGTGTGACACATACATTTTCTTTTTTTTCTTTTTTCCC
TCTTTTTTTTTCTTTCCCCCCCCCAATCTTTCATTTTTTTCTTCCTCCTA
CCCCCTTCCCCCATTTCCCCTTTTTTTCTTTTCNCTCCTTCCTTTTCCTT
TTTTCTTCCCCTTTTTTTCTCCTCTTTTCCCCCCCCTCTTTTTCCTCTCT
TTTTCTTTTTCCTTACTTTTNACCCCCCCCTTTTTTTTTCTCCTTCCCCT
TTTTTTTTCCTCCACTCTCTTCCTTTTATCTTTATTCTCTCTTTATTTTC
TTTCTTTCCCCTTTCCTTCTCTCCCCTTTTTCTTTTATCCTTTCTTCCCC
TTCTCCTCCTTTTTCTTTTTCCCCCTTTTCTTCTTACCCCTCTTTTCACT
TCTCCGTTCCTTTACCCTTCTTTTTCTTTCATTCTTTTTTCCTTCTCTCT
ATTTTTTCCCTCCTCCCTTTTCCTTTTCTTTTCTTCTCCCTCCTCTTTCC
CTTTTTTATTTTTTCCTTCTTTCCTCTTCTTTCTCCTCCTCTTTTCTTTT
CGTCCTCTATTTATTATCTCCTCTTTTCCTCCCCCTTTATTTTTCTTCCC
CTCCACTTTTTGTCTTCCCCCTCTATCCTCTCTTCCTTTCCCCTCTTTTT
TTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no260_g17.b1 MSMg01no260_g17.b1 CHROMAT_FILE:
MSMg01no260_g17.b1 PHD_FILE: MSMg01no260_g17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:30 2005
         (478 letters)



>mm_chr18_28149826_28150701
          Length = 876

 Score =  814 bits (421), Expect = 0.0
 Identities = 461/475 (97%), Gaps = 4/475 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgctgtcttcctgagcttttagggaaaataagagtgtagaaagctactttgtcc 64
           |||||||||||||  | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 gaattctgctgtcagcatgagcttttagggaaaataagagtgtagaaagctactttgtcc 617

                                                                       
Query: 65  ataagtaacatgtttatgtattattcacagtagcaaataattgcaaaatgtcaacatttc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 ataagtaacatgtttatgtattattcacagtagcaaataattgcaaaatgtcaacatttc 557

                                                                       
Query: 125 attttcctcttaaaagcttcttttgattagtgacctaattaaccattaagggaaaaaaag 184
           ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 556 attttcctcttaagagcttcttttgattagtgacctaattaaccattaaggaaaaaaaag 497

                                                                       
Query: 185 ctttttaactgtaaatatgaaaggagaaagtgtttcccagtagcaatttgtgatcttaaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 ctttttaactgtaaatatgaaaggagaaagtgtttcccagtagcaatttgtgatcttaaa 437

                                                                       
Query: 245 atgtcacaggcacgttcatcatggaggagcaaccaactcaacacttttcaaaatgatgtg 304
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 436 atgtcacaggcacgttcatcatggaggagcaaccaac-caacacttttcaaaatgatgtg 378

                                                                       
Query: 305 gtgtcagaagcatatggcatgaatttgttcagcttttttttttcatttttattttgtatt 364
           ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||
Sbjct: 377 gtgtcagaagcatatggcatgaatttgttcagcttttttttt--atttttattttgtatt 320

                                                                       
Query: 365 tattctggaacaagcaatgcaaatatagatatggttgcccgagaga-tttttctttgctt 423
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 319 tattctggaacaagcaatgcaaatatagatatggttgcccgagagattttttctttgctt 260

                                                                  
Query: 424 tttgaaaacccttcattattttccccaacagcctaggaaaggctgtttttaatct 478
           |||||||||||||||  ||||||||  ||||||||||||||| ||||||||||||
Sbjct: 259 tttgaaaacccttcaacattttccctgacagcctaggaaaggttgtttttaatct 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 876
Length adjustment: 10
Effective length of query: 468
Effective length of database: 866
Effective search space:   405288
Effective search space used:   405288
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)