BAC Information

Click to search

BAC

Clone NameMSMg01-261D06
Chromosome18 (Build37)
Map Location 72,891,377 - 72,891,628
singlet/doubletsinglet
Overlap genenone
Upstream geneDcc, LOC629684
Downstream geneLOC100043411, LOC100042955, Rkhd2, Smad4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-261D06.T7 (MSMg01no261_d06.b1)MSMg01-261D06.TJ (MSMg01no261_d06.g1)
ACCAG403657AG403658
length771742
length of high quality
(start - end)
263 (76 - 338)254 (66 - 319)
definitionCHROMAT_FILE: MSMg01no261_d06.b1 PHD_FILE: MSMg01no261_d06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:57:32 2005CHROMAT_FILE: MSMg01no261_d06.g1 PHD_FILE: MSMg01no261_d06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:57:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGCGGATCCGCGGAATT
CCAGGAGGCTCTGTTCTCGAGGTGATGTGGGAATCTTTTGGAGTAAGCAC
CCAGTTGCCAGTGAGAGTGGAAGACAGGGGGTGTCACCAGAGATCAAAGC
CAGGACAACTCCTGAAAGGTTTCTACCCCAGTCCACTTTGCATTCTCTTT
TTATTCTCTAAAAGCACAAGGTGACATGGGCAAGCAATCAAGAATTTACA
ATTTGCAGAGCCATATGTGGCAGTCAGCAGGTTGTTAAGGGCAAAGACCC
ACTGTTTCAGCTGTTTCTCCAAGTCGTTCTGTTTCAGGTAGCAAGTGAAG
TCATGCTTGGCAAATGAGCTTCACAAGCAGGCCCTTTCACTAAATCATCA
AATAAATGGATAAATCAGCATCTACTAATCTATATATTTTTTAAATCTTA
GTTTACCTCAGTGGGCTAAGACCCTTCCTTGCTTTTTTAAAAAAAAGGAT
GCTCTAACATTTATTTCTACCAGGATATTTCAGTATTGAAGGTGAAATTC
CTAACTTTTCACAATTATTTCTAGCTAACTAACACCCTTCTTATGGCTTA
TTAATTTTACAAAGTCTTTTGAATTATAATGTCTGTTTGTTTTTCCCCCC
GCCATAAACCCCCACTCTGTTATAACGGGAGGCAAAATATCCCTCGATAA
ACCTTGGAATGTTTATCTTTGAACACACTCTTGTTTCCATATCCAAATGG
TCATCCTCACTATAATTTTCC
ATGATGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCCATTCCTATAATTCTTACAAGAACCTATAGTTGT
TGAATTAATTCTGTTTGTACTTTGACAATTCCATGTGTTTATGTAGGACA
TTCTGATTTTTTTCTCTCTGCCATCCTCACACTTCCTTACCCATCCCTAT
CAAATCCTTCCTAGAAGCCCCTTTTCTGTTCTTAACTTGTAGGTTTGTTT
TGTGACCAGGTTAGTTTCATCTACAGTAAATGAACTTGTCATTATAAATG
ATCAGATCTATAACGAAGGGGAAGAGAGGCCAGAGGTCTAGGCCTGTGGT
GCACTCACCTTCCTGGTGTCTCTATTGTCTACTGAAAGGAAATGGGATCC
CAGGAGCTTCCAGCTGTTGCTGCTGTCTCTAACTGAAGCTGTATGTGAGA
AGTGTCTTAAATTAAACAGGAAAAATCTTTTCCCATTTCAATTTCCTTGA
TGTCTCTAACTTAAATGGCAGATTCTTAGACACATAGAGTAATATAATTT
TACAGTTGAGGGTCCTTTCCTGTAACCAGTAGATGAATCCCTTTCTCTTT
CTCTTCCCCCCTCTTTTCTTCCTTCCCACCCCCTTCTGTCTGGTCTCTAT
CTTGTTTCCGCCCCTCTGTTTCCTGTCTTCTCCTGCACTCTGGACTCCCC
CTCCCTGTACAACTGTACTCCTCTTGATGCCACAAAATACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no261_d06.g1 MSMg01no261_d06.g1 CHROMAT_FILE:
MSMg01no261_d06.g1 PHD_FILE: MSMg01no261_d06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:32 2005
         (254 letters)



>mm_chr18_72891175_72891828
          Length = 654

 Score =  472 bits (244), Expect = e-137
 Identities = 250/252 (99%)
 Strand = Plus / Plus

                                                                       
Query: 3   attcctataattcttacaagaacctatagttgttgaattaattctgtttgtactttgaca 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 attcctataattcttacaagaacctatagttgttgaattaattctgtttgtactttgaca 262

                                                                       
Query: 63  attccatgtgtttatgtaggacattctgatttttttctctctgccatcctcacacttcct 122
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 attccatgtgtttatgtagtacattctgatttttttctctctgccatcctcacacttcct 322

                                                                       
Query: 123 tacccatccctatcaaatccttcctagaagccccttttctgttcttaacttgtaggtttg 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tacccatccctatcaaatccttcctagaagccccttttctgttcttaacttgtaggtttg 382

                                                                       
Query: 183 ttttgtgaccaggttagtttcatctacagtaaatgaacttgtcattataaatgatcagat 242
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 383 ttttgtgaccaggttagtttcatctacagtaattgaacttgtcattataaatgatcagat 442

                       
Query: 243 ctataacgaagg 254
           ||||||||||||
Sbjct: 443 ctataacgaagg 454


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 254
Length of database: 654
Length adjustment: 9
Effective length of query: 245
Effective length of database: 645
Effective search space:   158025
Effective search space used:   158025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)