BAC Information

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BAC

Clone NameMSMg01-264G01
Chromosome18 (Build37)
Map Location 83,743,637 - 83,743,872
singlet/doubletsinglet
Overlap genenone
Upstream geneMbp, Zfp236, LOC100039563, Zfp516, LOC100041001, 4921531P14Rik, LOC665284
Downstream geneTshz1, Zadh2, LOC669856, Zfp407
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-264G01.T7 (MSMg01no264_g01.b1)MSMg01-264G01.TJ (MSMg01no264_g01.g1)
ACCAG405942AG405943
length700814
length of high quality
(start - end)
264 (353 - 616)237 (131 - 367)
definitionCHROMAT_FILE: MSMg01no264_g01.b1 PHD_FILE: MSMg01no264_g01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:32 2005CHROMAT_FILE: MSMg01no264_g01.g1 PHD_FILE: MSMg01no264_g01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCTAGATTCGGAGGGGGCGCGGNAATCNCACCAGTGTCCTGACGGAGGGG
TGAGAAGCACCTAAAAAAATGTTCAACAACCTTAATCTTTAAGTCAATGC
AAATCAAAACAACCCTGAGATTCTACCTCACACCATTCAGAATGGTTAAG
ATCAAAAACTCAGGTAACAGCAGATGCTGGCAAGGATGTGGAGAAAGAGG
AACACTTCTCCATTGCTGGTATTATTGCAAGCTGGTACAACCATTCCGGA
AATCAGTTTGATGGTTCCTCAGAAAAGTGAACATAATATTACTAGAGTAT
CCAGCAATATCTCTCCTGGGCATATACCCATATTATGTTCCACCCCGCAC
TAAGGACACACGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCA
GAAGCTGGAAAGAACCCAGATGACCTGATGAAAGTTAGTCCTGGTGTCAA
CTTGACTTGACGAAGAGATTATCTGAGTTTGGTGAAAGGCATCTTTGTGT
GTCCATGGGGGCGTTTCTAGACAGGATAGATAGTGGGAAAGTGAGCATTG
CTGGGGGGAAATCTGCCTTTGATGTGAACAGAGCCTCCAGCACCTGGAGG
ACCAGATAGATGAAAAAGAATTGTTTTTAGAAAGGGCAGCCCTCACTGGC
CTGCCTTCACATCCTCCCGAATGAGCACATCGATGTTAATTTGGCTATTC

CCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTTTCATCCTCTGGATAATAT
GCAGTCAGAAATTCCCAGGAATTTAGCGCCAACATAATTAGCTGGGCAGC
ACACCATGTACCAAGTCTTGTAAGAGGAAACTAGAAAGCCTTTTTTATTG
GTTTGATTTTTAAACCCTTGGGTGTGTCAAGCGAGGAACAGAAGTTAGCA
CTGTAAGTGTTCTGGAAGCCGCTGTCCTTCAACTTGTCAATTACGTGAGG
GTAGTGTGGGATGGATAGAAACGTCTCTGTTTGATTTTACTCTTGCTCTT
TCTCTCGGATATCCTGTTTTTTTTTGGCTACCCACCTAACCACAGATTGT
CGTTCACATACACTCATCTGCCACGATTTCTGATTAAATAGAATGTCACT
CCCATTATGAACCGACCAAGGTTGTCAAGTATGGCAAGGACTTGTGCGTT
GTAACTATTTTGTTTCCGTACGACGGACTGTGACTGATGAATGGAGAGAC
GTGTAAACTAAAAAAGCCGTTTCGGTATGCCGTGTTTGTTTGCTAAATCT
GTGTAGAAACCAGGAGGTTGTTATTCGAAAATGTTGAGGGCAATATTTTC
ATGACTCCAGGCGTAAAGTCGTGCAAGAATTGAGGAGCCGGAAAAGAGCT
TAGGGAGAGGTTGTGGTAACCCCAAGCGAACAAACGCGTGTCGAAGTTTT
TTACACAAGCGTCCGACTTTTCTTTCGAAAGACCCATCCGCCGCGATAAT
CTTACCAACCTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no264_g01.g1 MSMg01no264_g01.g1 CHROMAT_FILE:
MSMg01no264_g01.g1 PHD_FILE: MSMg01no264_g01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:01:32 2005
         (237 letters)



>mm_chr18_83743437_83744073
          Length = 637

 Score =  441 bits (228), Expect = e-128
 Identities = 234/236 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aacataattagctgggcagcacaccatgtaccaagtcttgtaagaggaaactagaaagcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 436 aacataattagctgggcagcacaccatgtaccaagtcttgtaagagggaactagaaagcc 377

                                                                       
Query: 61  ttttttattggtttgatttttaaacccttgggtgtgtcaagcgaggaacagaagttagca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 ttttttattggtttgatttttaaacccttgggtgtgtcaagcgaggaacagaagttagca 317

                                                                       
Query: 121 ctgtaagtgttctggaagccgctgtccttcaacttgtcaattacgtgagggtagtgtggg 180
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 ctgtaagtgttccggaagccgctgtccttcaacttgtcaattacgtgagggtagtgtggg 257

                                                                   
Query: 181 atggatagaaacgtctctgtttgattttactcttgctctttctctcggatatcctg 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 atggatagaaacgtctctgtttgattttactcttgctctttctctcggatatcctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 637
Length adjustment: 9
Effective length of query: 228
Effective length of database: 628
Effective search space:   143184
Effective search space used:   143184
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)