BAC Information

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BAC

Clone NameMSMg01-264G20
Chromosome18 (Build37)
Map Location 69,479,297 - 69,479,542
singlet/doubletsinglet
Overlap genenone
Upstream geneRnmt, Mc5r, Mc2r, LOC100043380, EG225681
Downstream geneTcf4, Ccdc68, Rab27b, 2310002L13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-264G20.T7 (MSMg01no264_g20.b1)MSMg01-264G20.TJ (MSMg01no264_g20.g1)
ACCAG405978AG405979
length729748
length of high quality
(start - end)
314 (46 - 359)248 (75 - 322)
definitionCHROMAT_FILE: MSMg01no264_g20.b1 PHD_FILE: MSMg01no264_g20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:36 2005CHROMAT_FILE: MSMg01no264_g20.g1 PHD_FILE: MSMg01no264_g20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTCAGACACAGATTTCTAAAGCTCTCTTGAGAAGAGGAAAACTGA
AAATTCCACATCAAGAAGTTAACATTGGGGCATGGGAGATGACGCAGTCA
GTATAATGCTTGCCACCCAAGTGTGAGGACCTGAGTTCAGATCTTCAACA
CCCACATATACCGAGTGTGGTAGGGAGCATCTCTTACCCTAGTGCTCAGG
CAGAGGCATATGCGGGGAGAGCCCCAGAGATTGTTGTCATTCTGCCCATC
CCATCTGTGAGCGCTATGTTCTTCAAGAGACATTGTCTCAGTAATGATAA
CAACAATTTTTAATANANGCCAGAAACCGAAGTACGTATCTGATATGGTC
CTCTGAANTCTGCATGCNTGTGCAAACNTATGCAAAAGGGCCGCATGCGT
ACGCACAAAGAGATCTAATTCATAAAGTAAACCTTCAAAAATCTATAATC
CTTGCACAGTTCTTGACAACTGACAGCATAATGCCAACCATGGAGATTCT
TCAAGTAAGCAGAGGCCGAGCAGGGTCTCTCAACTTGACTTGGAAGGCAG
CACTGCCCTGCTAGGAAACAAAGGCACATGTCATTTATTAAAAGAAATAT
ACATATTTCATAAAGGAAGCAGCATTAGCAAGATGCTGGCAAGCAGAATC
AGCATCTCAGATCTGTTCCTTAATGAGTN
GCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTAGACATTTAGAAAACATTAGCTTC
AGGGTGGAGGAAAGATGTCAGACAGGCTAACGTGGTTGTGGAGAGACAAG
GTAGAAGGCGGTGCTAGCGGTAGGGAGAAGAGATGATAACTGAATTAGAG
TGTGGACGGTGGAGATGAAAAACGGACTAAGACTTTGGTACATGACTAAG
CAGGTGAGAGAGTCATTCCTGTGTGGTCTTAATGCACAGACATGCTTAAA
ATACACAGCTGGGAGGCATATTTGATGTGGGTTCACATCCAAAACCCTAA
AAGGCATCTCTTAATGAATTCCCAAGGCAAATCCCGTTTGAGAAGAGACG
AGTGTGTAATGCCTGGCCTCAAGATGAAGATCATTCTTGGGATGAAGTGA
TTTCACTTCCTCTTTTCCCCAGAGGCTGTGGAGTGAGCTCCCTCATGCTC
CATTATTCACTGGTACCCCATGGCCAGCACATCCCAGTCCCAGGTGTTTC
AGTTCTTCCAGGGCTCTCCTTCATGGAAGAGATGTATCGATACCTTCGTT
GTATAGATCTCTCCTGAGATCACTTCCTGTGTAGCTCATGACCTCTTGAA
TGATTTTTGCCATGATATACACCCATGGATTACTTGCCTGTGAAAATGAT
TGAATCTCCTTCTGACATCAGACAGCTAGAAGAGAAGAATCCGAGGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no264_g20.g1 MSMg01no264_g20.g1 CHROMAT_FILE:
MSMg01no264_g20.g1 PHD_FILE: MSMg01no264_g20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:01:36 2005
         (248 letters)



>mm_chr18_69479097_69479744
          Length = 648

 Score =  468 bits (242), Expect = e-136
 Identities = 245/246 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttagacatttagaaaacattagcttcagggtggaggaaagatgtcagacaggctaacgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ttagacatttagaaaacattagcttcagggtggaggaaagatgtcagacaggctaacgtg 387

                                                                       
Query: 61  gttgtggagagacaaggtagaaggcggtgctagcggtagggagaagagatgataactgaa 120
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ggtgtggagagacaaggtagaaggcggtgctagcggtagggagaagagatgataactgaa 327

                                                                       
Query: 121 ttagagtgtggacggtggagatgaaaaacggactaagactttggtacatgactaagcagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ttagagtgtggacggtggagatgaaaaacggactaagactttggtacatgactaagcagg 267

                                                                       
Query: 181 tgagagagtcattcctgtgtggtcttaatgcacagacatgcttaaaatacacagctggga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tgagagagtcattcctgtgtggtcttaatgcacagacatgcttaaaatacacagctggga 207

                 
Query: 241 ggcata 246
           ||||||
Sbjct: 206 ggcata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space:   152721
Effective search space used:   152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)