BAC Information

Click to search

BAC

Clone NameMSMg01-267A11
Chromosome18 (Build37)
Map Location 87,998,984 - 87,999,296
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC435580, LOC546719, LOC383318, Ppia-ps18_1039.1, LOC329008
Downstream geneLOC100039961, LOC100039972, LOC623177, LOC665497, LOC100040003
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-267A11.T7 (MSMg01no267_a11.b1)MSMg01-267A11.TJ (MSMg01no267_a11.g1)
ACCAG407861AG407862
length726719
length of high quality
(start - end)		319 (46 - 364)532 (78 - 609)
definitionCHROMAT_FILE: MSMg01no267_a11.b1 PHD_FILE: MSMg01no267_a11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:04:59 2005CHROMAT_FILE: MSMg01no267_a11.g1 PHD_FILE: MSMg01no267_a11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:04:59 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTTACCCTCTTCACAGGTCCCTCTTTCTGTCTCGTGGATTTTTCT
AGGGATTATAGTTAGGTTTGAAACACTGAAGACAAATAGATTTATATCCA
GGCCAGTTCATCTGGTCACAAAGTCTGTTGTTGCCTTGTTACAAGATTCT
TATAAATAAAATGAAATCAAAGATGTTATTATAAATGAATCCTTTGCTTT
GATAGTTGCAAGGTATTGAACCCACAGTTGGTACACACACCATATAACAA
GGATAACAATGAATCACATCCCAAGTCGAAAAGGCTCATTCAGGTAAGAA
GTGACTAGTGTAANCTGCNGCACCCCCACCCCCGAATATAGTATTATATT
CCTCATACTTCTATTTCACACCAAATATAAACAAACTTTGAGTGGCTCCT
TAAGCCTTCAGAACTGAACAGGGTTGAATAAACTACTGTTTTATATCTTC
TCACTGTCCAAAATGATCTGATTTAATGACAGTAGACAGACATCTCTAGG
GTTATTTGCTTGTTTGTTATATTGGTTAATTTATTTGACTTGGTGAATGA
AATTGTGTGTGTGTGTGTGTGTGTGTNTNNTNTNNNTNTTNCTTTTNTNT
TTTTTTTTTTTTCCNNNTTTTTTTTTTTTTTTTTCTTTTTTTTTTNNTTT
NTCTTCTTTCTCTTTTTCTCTTTTCT

NCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCGGTTTAGTTCTATTCCCTATT
TTTGATTGGGTTGTTTGATTTTTTGGTGTTTGGCTTCTTGAGTCTTTATA
TATTTTGGATATTAGCTCTCTATCAGATGTGGGGTTAGTGAAGATTGTTT
ACCCATCTGTAGGTTGCTGTTTTGTCCTATTGACAGTGTATTTTGCCTTA
CATAAGCTTTCCAGTTTCATGAGATCTCATTTATCAATCTTAGATCATGA
ATCATTGGAGTTCCGTTTAGGCTTATTTCCTCCTGTGCCAATGAGTTTAC
GGTTTTTACCCACCACCCCCCCTTCTCTTCTATTAAACTGAATTTATTTG
GTTTTATGTTGAGGTCCTTGACCCACTTGGACATGAAAATGTCTTTTTTT
TATATTATTCTTATTAGTTTTTGTTTGGTTTTCTTAGACCTTAAACTAGC
TTTGTCTGCTTACTTCTAGCTTCCATTTGCTTGGAATATCTCTTTTTATT
CTTTCTTCTCTAAATTGATGTTTATCGTTGTTTTTGATGTTTATTTTTTC
CTGTAATTGACCGAAAGATCTATCATTCCTTCTGATCCACACTTTTAGTC
TGTGTCTCTTCACTGGGGAATTAAGTCCTTTAACTTTTTGTCATAACTGA
GTATTTCATATTTTTTTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no267_a11.b1 MSMg01no267_a11.b1 CHROMAT_FILE:
MSMg01no267_a11.b1 PHD_FILE: MSMg01no267_a11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:04:59 2005
         (319 letters)



>mm_chr18_87998780_87999498
          Length = 719

 Score =  574 bits (297), Expect = e-168
 Identities = 309/313 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccttaccctcttcacaggtccctctttctgtctcgtggatttttctagggattat 64
           ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 517 gaattccttaccctcttcacaggtccctctttctgtctcatggatttttctaaggattat 458

                                                                       
Query: 65  agttaggtttgaaacactgaagacaaatagatttatatccaggccagttcatctggtcac 124
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 agttaggtttgaaagactgaagacaaatagatttatatccaggccagttcatctggtcac 398

                                                                       
Query: 125 aaagtctgttgttgccttgttacaagattcttataaataaaatgaaatcaaagatgttat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 aaagtctgttgttgccttgttacaagattcttataaataaaatgaaatcaaagatgttat 338

                                                                       
Query: 185 tataaatgaatcctttgctttgatagttgcaaggtattgaacccacagttggtacacaca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 tataaatgaatcctttgctttgatagttgcaaggtattgaacccacagttggtacacaca 278

                                                                       
Query: 245 ccatataacaaggataacaatgaatcacatcccaagtcgaaaaggctcattcaggtaaga 304
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 277 ccatataacaaggataacaatgaatcacatcccaagtcgaaaaggctcattcaggtgaga 218

                        
Query: 305 agtgactagtgta 317
           |||||||||||||
Sbjct: 217 agtgactagtgta 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |