Query= MSMg01no270_l02.b1 MSMg01no270_l02.b1 CHROMAT_FILE:
MSMg01no270_l02.b1 PHD_FILE: MSMg01no270_l02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:25 2005
(516 letters)
>mm_chr18_65449223_65450138
Length = 916
Score = 984 bits (509), Expect = 0.0
Identities = 512/513 (99%)
Strand = Plus / Minus
Query: 4 ggaattctatcaaatgtccactatttactactccaattgtacctctgaaaaggcattgcg 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 ggaattctatcaaatgtccactatttactactccaattgtacctctgaaaaggcattgcg 657
Query: 64 gaggatcttgggaactaccagtcccatccctaccaaccattgtttgacatcatgccaaag 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 gaggatcttgggaactaccagtcccatccctaccaaccattgtttgacatcatgccaaag 597
Query: 124 ggcctgtctcttgagatcaggaacaaccttcccccatgttggttctagaaatattatagt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 ggcctgtctcttgagatcaggaacaaccttcccccatgttggttctagaaatattatagt 537
Query: 184 tcccagacactttgcctgagaggccatttctctgacattggcttgtgtaacccatgtctc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 tcccagacactttgcctgagaggccatttctctgacattggcttgtgtaacccatgtctc 477
Query: 244 aaagcacctttatcgctggccaattctacattgtaagttttgtttctggggtgtagttta 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 aaagcacctttatcgctggccaattctacattgtaagttttgtttctggggtgtagttta 417
Query: 304 gtggcaggaccgtcgcctaacctaattcactacgtcctggtaagggtccccagaactaaa 363
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 416 gtggcaggaccgtcgcctaacctaattcactaggtcctggtaagggtccccagaactaaa 357
Query: 364 acaaacaaacaaaaaaagatgcttctgtgatgccaaacagccatgatgggcctaggaatc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 acaaacaaacaaaaaaagatgcttctgtgatgccaaacagccatgatgggcctaggaatc 297
Query: 424 tatttatctgagcaatcttagaaatagtaatcgtcttgctaagcaatattctgaattctc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 tatttatctgagcaatcttagaaatagtaatcgtcttgctaagcaatattctgaattctc 237
Query: 484 ccagtcactcggattcaccatgtttttgtctga 516
|||||||||||||||||||||||||||||||||
Sbjct: 236 ccagtcactcggattcaccatgtttttgtctga 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 916
Length adjustment: 10
Effective length of query: 506
Effective length of database: 906
Effective search space: 458436
Effective search space used: 458436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no270_l02.g1 MSMg01no270_l02.g1 CHROMAT_FILE:
MSMg01no270_l02.g1 PHD_FILE: MSMg01no270_l02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:25 2005
(666 letters)
>mm_chr18_65259801_65260866
Length = 1066
Score = 1224 bits (633), Expect = 0.0
Identities = 657/667 (98%), Gaps = 6/667 (0%)
Strand = Plus / Plus
Query: 1 aggtgatttggaagaacagcaagtgatcttaactgctaaaccataccttcccagactcca 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 205 aggtgatttggaagaacagcaagtgatcttaactgctaagccataccttcccagactcca 264
Query: 61 atgctggctgttttaaaaataggaggcagccagaggaataaggatggcctagacactccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atgctggctgttttaaaaataggaggcagccagaggaataaggatggcctagacactccc 324
Query: 121 atctctccttctggattttaagttttctctctctctctctctctctctctctctctctct 180
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 325 atctctccttctggattttaagtt----ctctctctctctctctctctctctctctctct 380
Query: 181 catagtgggagacaaccttttgtttccttaacattctgtgctgtgatttctataaggagc 240
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 381 catagtgggagacaaccttttgtttccttaacattctgtgctgcgatttctataaggagc 440
Query: 241 tgtaagggcccctctacggtctttaggattaaataaaactccttttgtttgtttcctgtg 300
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtaagggtccctctacggtctttaggattaaataaaactccttttgtttgtttcctgtg 500
Query: 301 gtacattcttagaataccaatatctctgtgtgtcccaagtggctgtagaaccggtattgt 360
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtacattcttagaatagcaatatctctgtgtgtcccaagtggctgtagaaccggtattgt 560
Query: 361 ggctatataacaagtcaagcagacgtacttatcattctgtaagccctaattgtaccattc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggctatataacaagtcaagcagacgtacttatcattctgtaagccctaattgtaccattc 620
Query: 421 tctttcctccgggaaggccttcctggccttccctgtatgctcttgatatagccagaagac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tctttcctccgggaaggccttcctggccttccctgtatgctcttgatatagccagaagac 680
Query: 481 catagttacagattacatctatggcaccttctgaaattcaaaatagaacaatagactagg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 catagttacagattacatctatggcaccttctgaaattcaaaatagaacaatagactagg 740
Query: 541 atgtagctcagtacccattgaagcccttggtccca-ccaccatacactgatgaattcatg 599
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 741 atgtagctcagtacccattgaagcccttggtcccaacc-ccatacactgatgaattcatg 799
Query: 600 taatcctggtatatgagaggtaggggctagagaatgagatgttcagagtcattcttggct 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 taatcctggtatatgagaggtaggggctagagaatgagatgttcagagtcattcttggct 859
Query: 660 acattaa 666
|||||||
Sbjct: 860 acattaa 866
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1066
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1056
Effective search space: 692736
Effective search space used: 692736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
