Query= MSMg01no270_n01.b1 MSMg01no270_n01.b1 CHROMAT_FILE:
MSMg01no270_n01.b1 PHD_FILE: MSMg01no270_n01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:34 2005
(659 letters)
>mm_chr18_69283566_69284624
Length = 1059
Score = 1029 bits (532), Expect = 0.0
Identities = 568/584 (97%), Gaps = 8/584 (1%)
Strand = Plus / Minus
Query: 4 ggaattcaggttgtttctttggggaaagccattcggagggtagacagaccataacatcca 63
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 ggaattcagtttgtttctttggggaaagccattcggagggtagacagaccataacatcca 525
Query: 64 cacatgaatccatgcccactggacttgaagcttgtgtttttacatatttcggtttatcat 123
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 524 cacatgaatccatgcccactggacttgaagcttgtgtttttacatatttcggtttatcgt 465
Query: 124 ggttgtgaagctctcaggaacggagaatgctgtagagaagaacaatatcccggaattaat 183
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 464 ggttgtgaagctctcaggaacggagaatgctgtagagaagaacaatatccccgaattaat 405
Query: 184 gatgcaatgcccgtcattcgctatgaggcagtttgcaagccctaggatatgtcctgtgcc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 gatgcaatgcccgtcattcgctatgaggcagtttgcaagccctaggatatgtcctgtgcc 345
Query: 244 acgggcgttattgttttcaatgaaatgtgttccacgtacaagcactttcatatacatatg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 acgggcgttattgttttcaatgaaatgtgttccacgtacaagcactttcatatacatatg 285
Query: 304 ctgtgtggaaagagacacatacctacttatgcacaggatctaaatagcaccacacataca 363
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 284 ctgtgtggaaagagacacatacttacttatgcacaggatctaaatagcaccacacataca 225
Query: 364 cacttttttgttgttcaactctgtgtgcatgtgtgtttgtgtgtctgtgtg------cgc 417
||||||||| |||||||||||||||||||||||||||||||||| |||||| |||
Sbjct: 224 cactttttttttgttcaactctgtgtgcatgtgtgtttgtgtgtgtgtgtgtgtgtgcgc 165
Query: 418 acatgtttgtgtgcacacatgcatgtgagcatgtttgtgtgtctttgaatgtgtatgttt 477
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 164 acatgtttgtgtgcacacatgcatgtgtgcatgtttgtgtgtctttgaatgtgtatgttt 105
Query: 478 ttgtgcatgcatgtgtgtgtgtgt--ttaatactcatcagttattactgggttccagtga 535
|||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 104 ttgtgcatgcatgtgtgtgtgtgtgtttagtactcatcagttattactgggttccagtga 45
Query: 536 gctgccgtcaggaatggaagtcagggtgagggaatataaaaata 579
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44 gctgccgtcaggaatggaagtcagggtgagggaatataaaaata 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1059
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1049
Effective search space: 680801
Effective search space used: 680801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no270_n01.g1 MSMg01no270_n01.g1 CHROMAT_FILE:
MSMg01no270_n01.g1 PHD_FILE: MSMg01no270_n01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:34 2005
(655 letters)
>mm_chr18_69135874_69136930
Length = 1057
Score = 1259 bits (651), Expect = 0.0
Identities = 655/657 (99%), Gaps = 2/657 (0%)
Strand = Plus / Plus
Query: 1 caagacacccctcaaagcccggacttatgtcaacaagagttttctagcggagcagaggtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caagacacccctcaaagcccggacttatgtcaacaagagttttctagcggagcagaggtt 260
Query: 61 tatctgggaatctggctgccagcattcattccctgatctgcctgctccatccaacaacat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatctgggaatctggctgccagcattcattccctgatctgcctgctccatccaacaacat 320
Query: 121 agacctgactttcttgccagcagccagccgagcagggcagccaagactaacaagtgtagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agacctgactttcttgccagcagccagccgagcagggcagccaagactaacaagtgtagg 380
Query: 181 cactgtgcagggtacagggcatatgaatagcgctattctttgctggccaacactggcccc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cactgtgcagggtacagggcatatgaatagcgctattctttgctggccaacactggcccc 440
Query: 241 attgtttcaggcaatgaatagagctgtgtggaaaaaaaaatcacacacaaagtaaaagct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attgtttcaggcaatgaatagagctgtgtggaaaaaaaaatcacacacaaagtaaaagct 500
Query: 301 gcaaaatttgtctctttgtgatggtttcaagactgggtgaaaaagccgttctttccctgg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcaaaatttgtctctttgtgatggtttcaagactgggtgaaaaagccgttctttccctgg 560
Query: 361 tgctgttttacattttctttcacaaatagaaagcacgctctggcaaggacagaagcttt- 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgctgttttacattttctttcacaaatagaaagcacgctctggcaaggacagaagctttt 620
Query: 420 -cagtcagagctcaaaagttacaggtcacagtgcaggtgggagagctcggagtcaacctc 478
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcagtcagagctcaaaagttacaggtcacagtgcaggtgggagagctcggagtcaacctc 680
Query: 479 gaggcttagcattcggattcatcaagacacggagggatgaagtgacgcgggcgttgagct 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gaggcttagcattcggattcatcaagacacggagggatgaagtgacgcgggcgttgagct 740
Query: 539 gagaggctgtgcttctgcggtcatctttacccatttgacacgggggttttgtttgctgac 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gagaggctgtgcttctgcggtcatctttacccatttgacacgggggttttgtttgctgac 800
Query: 599 ccagataacagaggaagttaagcacctctgcttaattactacataggatcaggtact 655
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ccagataacagaggaagttaagcacctctgcttaattactacataggatcaggtact 857
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1057
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1047
Effective search space: 675315
Effective search space used: 675315
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
