BAC Information

Click to search

BAC

Clone NameMSMg01-272G10
Chromosome18 (Build37)
Map Location 59,969,108 - 59,969,394
singlet/doubletsinglet
Overlap genenone
Upstream geneAdamts19, A730017C20Rik, 4833446K15Rik, LOC667549
Downstream geneEG240327, LOC546714, EG225594, F830016B08Rik, LOC667578, EG667584, LOC435565, Iigp1, EG629292, LOC667597, 2010002N04Rik, Dctn4, Rbm22, Myoz3, Synpo, LOC100042675, Ndst1, Rps14, LOC667619, Cd74
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-272G10.T7 (MSMg01no272_g10.b1)MSMg01-272G10.TJ (MSMg01no272_g10.g1)
ACCAG411696AG411697
length706710
length of high quality
(start - end)
289 (69 - 357)282 (77 - 358)
definitionCHROMAT_FILE: MSMg01no272_g10.b1 PHD_FILE: MSMg01no272_g10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:33 2005CHROMAT_FILE: MSMg01no272_g10.g1 PHD_FILE: MSMg01no272_g10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGCATTTCCCAATATGTCATTAAAAACACATTCCTTTTTTTTTCTT
GGCACTGCATGATATTATATCCTTTGAACTTTTCAGAACTTCTTAGTAAT
TTACACTGTTTGAAAAAAATGTGCAATAATATAGAAGGTAGAAATCATAA
CCAAATCTGATTTAATGCAATGTATTCCAAAGCACAATTTATTTTCTCAC
TAATATAACAGAGTTGTCAATCAGGAGGTGTCCTTATTATAGTGACAGAA
TTTCTATCATAGCTCATGCTATAGGGTATAGAAAATATTTTTGACGTGTG
TGGATATTTTTCTTCCCCCCCCCCCCCGAACGTGAGGCTCTGGATATCCT
CCAGTAGAGAAGTCAGAGAAAAGAATGAAATACTGAATCATTTGTTTTTA
GGACATAAAAGAGGGGAAAGTGTAATAGAGTTGATAAATGGCTCCCAAAT
GCTTACCCAGAATCCAGTGTTTTGTATTCTATAAATCAGCCCATCTTTAC
AAATCAGGGCTCCCACAGAAGGCTCTACTCACAGAGGGCTGTTATAAAGG
TCAACTGTGAGTGTAAACACTGAGAATTTACGGCACACATTTATGCGTTT
TTCCCCAGATAACAATAATGCGGAAAAATCATTTATCTCTGTATTTTGCC
ATGAAN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTCCAGAAAACTTTCATTACCTC
TTTGAGATGTCTTTTATAACCCAATAATGCCTTTCTTAAGTGCCTGGGAG
CCGTTCCTTTAAAATGTAATAATGAAGAAAAATGGGTCTCTCTATCTCCC
AGTTCTGTGGGGGAAGCAAGACTGGAACCCTTACAATAGGCATCTGGCCT
GCTGTCAATTACGTGGCTCAGCTGCACTGGCCACACTCAGCAGTCTTCCA
GTACTTTTGCATTAGCTGATATAAGCATTTTCAAATGTTCATATTTGATG
CTTCATATGAATTGTTTCNNGNTCTTTNNACTGTTGCGGTAGACTTCAAT
ATAGACTTCCTTGATATTTTTAACAAAAATCCAATGCAATGTCTGTTTTA
CAGAGGGTAAGAAAGAAACAAAGAAACCAACATCTGCTTGAATATGCAAA
CTGCTGTCTAAAAGCACAGCAGGGACCTGAGTGCATCCTGAGGTTGTACA
TGAACACTGGCCTCTTGGGGACTCCTTTGTGCTTCACAGTTGGCTAAGAC
AAATGGAGTCTGTGACAGACTCTGAATCTGAGAGTTTACTTGAATATACT
AATACCAGACCACCCCTCCCACTGGATATTCTTTTAAGACAGCCTCATCC
TAGTGTCTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no272_g10.b1 MSMg01no272_g10.b1 CHROMAT_FILE:
MSMg01no272_g10.b1 PHD_FILE: MSMg01no272_g10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:33 2005
         (289 letters)



>mm_chr18_59968908_59969597
          Length = 690

 Score =  547 bits (283), Expect = e-160
 Identities = 286/287 (99%), Gaps = 1/287 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtcattaaaaacacattccttttttttt-cttggcactgcatgatattatatcctttga 59
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 201 tgtcattaaaaacacattccttttttttttcttggcactgcatgatattatatcctttga 260

                                                                       
Query: 60  acttttcagaacttcttagtaatttacactgtttgaaaaaaatgtgcaataatatagaag 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acttttcagaacttcttagtaatttacactgtttgaaaaaaatgtgcaataatatagaag 320

                                                                       
Query: 120 gtagaaatcataaccaaatctgatttaatgcaatgtattccaaagcacaatttattttct 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtagaaatcataaccaaatctgatttaatgcaatgtattccaaagcacaatttattttct 380

                                                                       
Query: 180 cactaatataacagagttgtcaatcaggaggtgtccttattatagtgacagaatttctat 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cactaatataacagagttgtcaatcaggaggtgtccttattatagtgacagaatttctat 440

                                                          
Query: 240 catagctcatgctatagggtatagaaaatatttttgacgtgtgtgga 286
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catagctcatgctatagggtatagaaaatatttttgacgtgtgtgga 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 690
Length adjustment: 9
Effective length of query: 280
Effective length of database: 681
Effective search space:   190680
Effective search space used:   190680
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)