BAC Information

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BAC

Clone NameMSMg01-273N11
Chromosome18 (Build37)
Map Location 88,721,665 - 88,721,892
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC329008, LOC100039961, LOC100039972, LOC623177
Downstream geneLOC665497, LOC100040003, LOC623208, Socs6, Rttn, Cd226, Dok6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-273N11.T7 (MSMg01no273_n11.b1)MSMg01-273N11.TJ (MSMg01no273_n11.g1)
ACCAG412736AG412737
length738732
length of high quality
(start - end)
544 (42 - 585)287 (71 - 357)
definitionCHROMAT_FILE: MSMg01no273_n11.b1 PHD_FILE: MSMg01no273_n11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:17 2005CHROMAT_FILE: MSMg01no273_n11.g1 PHD_FILE: MSMg01no273_n11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTCACCTGAGGCATACCGAATAGCAGAGAAGAACCTGAAAAAATGATCAA
CATCCTTAATCATCAGGGAACATGCAAATCAAAACAACCCTGAGATTCTA
CCTCACTCCAGTCAGAATGGCTAAGATCCAAAAATTCAGGTGACAGTAGA
TGCTGGCGAGGATGTGGAGAAAGAGGAATACTCCTCCATTGTTGGTGGGA
TTGCAAACTTTTACAACCACTCTGGAAATCAGTCTGTCAGTTCCTCAGAA
AATTGGATATAGTACTACTGGAAGTTCTTGAAATCCCTCTCCTGGGCATG
TATCCAGAAGATGTTCCAACCAGTAACAAGGACACATGCTCCACTATGTT
CATAGCAGCCTTATTTATAGTAGCCAGAAGCTGGAAAGAACCCAGATGCC
CCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAATGGAG
TACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGGCAAATG
AATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACCCAATCACAAAGGA
ACTCACACAATATGTACTCACTGATAACTGCATATTAGCCCAGAAACTTA
GGTTACCCAAGATATAAGATACAATTTGCTAAATGCATGAAACTCAAGAA
GATTGAAGACCAAAGTGTGGACACTTTGACCCTTCTTN
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXACTTGCTCCTTTAGTTGTGACATCTGTATA
TTTCTATGAACAATGAGACGCCCTATCATTGGGTTTTCAGGTCTTAGATT
TCAGAAAGCTATCAGCAACTACACCCTATGTCACACACCCTCTGTGATGG
TTTGTATATCCTTGGACCAGGGAGTGGCACCATCTGGAGGTATGGCCTTG
TTGGAATAGATGTGACCTGGTTGGAATGGGTGTGTCACTGTGGGTGTGGG
CATAAGATCCTCACCCTATTTGCCTAGAAGTCAGTCTTCCACTAGCAGCC
TTTGGATTTTTATATAGACCACTCTCCCCTCCTCCTGTGCCATGCCTGCC
TGGATACTGCCATGCTCCCATCTTGATGATAATGGACCGAACCTCTGAAC
CTGTAAGCCAGCCTCAATTAAATGTTGTTTTTTATAAGACTTGCCTTGGT
CATGGTGTCTGTTCCCAGCAGTAAAAACCTAACTAAGATACCCTCCCACC
CAGGTCCTAAATCTTAACTATCAGACAGAGAGTCATACCCTTGTCTCTCA
TGGCTCTCAGGCCTTCAGGTCTGGCTGATTCATAGTACATATTTTCCAGA
CTCTTCAGTTTTAGGTAGCAGATCATGAGTCTTTGCAGATTCACAACAGT
TGGAACCATCACTACATTAATATCTGCATACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no273_n11.g1 MSMg01no273_n11.g1 CHROMAT_FILE:
MSMg01no273_n11.g1 PHD_FILE: MSMg01no273_n11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:17 2005
         (287 letters)



>mm_chr18_88721465_88722151
          Length = 687

 Score =  395 bits (204), Expect = e-114
 Identities = 222/228 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   acttgctcctttagttgtgacatctgtatatttctatgaacaatgagacgccctatcatt 60
           |||||||||||| |||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct: 201 acttgctccttttgttgtgacatctgtatatttctatcaacaatgagaggccctatcatt 260

                                                                       
Query: 61  gggttttcaggtcttagatttcagaaagctatcagcaactacaccctatgtcacacaccc 120
           |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 261 gggttttctggtcttagatttcagagagctatcagcaactacaccctatgtcacacaccc 320

                                                                       
Query: 121 tctgtgatggtttgtatatccttggaccagggagtggcaccatctggaggtatggccttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctgtgatggtttgtatatccttggaccagggagtggcaccatctggaggtatggccttg 380

                                                           
Query: 181 ttggaatagatgtgacctggttggaatgggtgtgtcactgtgggtgtg 228
           ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttggaataggtgtgacctggttggaatgggtgtgtcactgtgggtgtg 428


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)