Query= MSMg01no276_d19.b1 MSMg01no276_d19.b1 CHROMAT_FILE:
MSMg01no276_d19.b1 PHD_FILE: MSMg01no276_d19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:16:08 2005
(274 letters)
>mm_chr18_63365231_63365905
Length = 675
Score = 422 bits (218), Expect = e-122
Identities = 248/258 (96%), Gaps = 3/258 (1%)
Strand = Plus / Minus
Query: 5 gaattctttatcatctcaatatgtgttctctgccttttaaaataaatggcaacgcgaaat 64
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 461 gaattctttatcatctcaatatgtgttctctgccttttaaaataaatggcaacatgaaat 402
Query: 65 ggcttttctatctgacttagggtgggagtcagctcacagagccgtttctcaagcttctct 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 ggcttttctatctgacttagggtgggagtcagctcacagagccgtttctcaagcttctct 342
Query: 125 ctgcgctatacttgccttgagagttactggaacctgagcactcacctgggaccc-agaca 183
|||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||
Sbjct: 341 ctgcgctatacttgccttgagagttactggaacctgagcactcacccaggacccga-aca 283
Query: 184 cagctatggggctcagcctttgacctggttccaggactcaacagtgagaactcagtcccg 243
|| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 282 cacctatggggctcagcctttgacctggttccaggactcagcagtgagaactcagtcccg 223
Query: 244 ctctttcatgc-gggggg 260
|||||| |||| ||||||
Sbjct: 222 ctctttgatgcagggggg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 675
Length adjustment: 9
Effective length of query: 265
Effective length of database: 666
Effective search space: 176490
Effective search space used: 176490
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no276_d19.g1 MSMg01no276_d19.g1 CHROMAT_FILE:
MSMg01no276_d19.g1 PHD_FILE: MSMg01no276_d19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:16:08 2005
(290 letters)
>mm_chr18_63173931_63174620
Length = 690
Score = 549 bits (284), Expect = e-161
Identities = 287/288 (99%)
Strand = Plus / Plus
Query: 1 tatgatattgcaggctggaagacagggggctgggagtggagcgtggagcgggactagcct 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 tatgatattgcaggctggaagacagggggctgggagtggagcgtggagagggactagcct 260
Query: 61 tggaaaaggagagaggacacggttctctttgaacctgcagagaaggaagaaggaccttgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggaaaaggagagaggacacggttctctttgaacctgcagagaaggaagaaggaccttgt 320
Query: 121 gatataagatgtttattaaggaggggaaacatcgtcctcaggagcatccactgggttggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatataagatgtttattaaggaggggaaacatcgtcctcaggagcatccactgggttggg 380
Query: 181 tttaatctgctctttcagatggccagtagggaggcaatctattgaaacagtagcagggag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttaatctgctctttcagatggccagtagggaggcaatctattgaaacagtagcagggag 440
Query: 241 gagcttgacaaatcacgtggtcacttgtgaaggatccatttgttggct 288
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagcttgacaaatcacgtggtcacttgtgaaggatccatttgttggct 488
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space: 191361
Effective search space used: 191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
