BAC Information

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BAC

Clone NameMSMg01-276H10
Chromosome18 (Build37)
Map Location 21,833,912 - 21,834,192
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040823, B4galt6, D030074E01Rik, Rnf125, Rnf138, Mep1b, EG622978, Gm944, LOC665722, LOC225264, Klhl14
Downstream gene4921528I01Rik, LOC546708, LOC100040547, Asxl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-276H10.T7 (MSMg01no276_h10.b1)MSMg01-276H10.TJ (MSMg01no276_h10.g1)
ACCAG414642AG414643
length715718
length of high quality
(start - end)
312 (45 - 356)283 (77 - 359)
definitionCHROMAT_FILE: MSMg01no276_h10.b1 PHD_FILE: MSMg01no276_h10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:24 2005CHROMAT_FILE: MSMg01no276_h10.g1 PHD_FILE: MSMg01no276_h10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTCTTTAGCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTT
CTGGAGTCCACCTTCTTGAGCTCTTTATATATATTGGATATTAGTCCCCT
ATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTT
TTGTCTTATTGACGGTGTCTTTTGCCTTACAGAAGCTTTGCAGTTTCATG
AGGTCCCATTTGACAATTCCTGATCTTACAGCACAAGCCATTGCTGTTCT
ATTCAGGAATTTTCCCCCTGTGCCCATATCTTCCGGGCTTTTCCCCATTT
TCTCCTCTATATTTTCACCCGCCCCCCGGCTCTATGTGGAATTCCTTGAT
TCACTTAGATTTGACCTTAGAATAAAGAGATAGGAATGGATCAATTCACA
TTTTTCTACATGATAACCAGCAGTTCTGCCAGTACCATTTGTTGAAAATG
ATGTCTTTTTTCCACTGGATGGTTTTAGCTCCCTTGTCAAAGATCAAGTG
ACCATAGGTGCGTGGGTTCATTTTTGGGTCTTCAATTCTATTCCATTGGT
CTACTTGTCTGTCACTTTACCAGTACCATGCAGTTTTTATCACAATTGCT
CTGTAGAACAGCTTTATGTCATGCATGTTTAATCCACCACAGGTTCTTTT
TACCTTGAGAAGAGT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCACTCTGTTCGCTTGAATGACTCC
CTGAACAATACCAACTTAGTAACCTTTTCAGTACTGGGAGGGGGAGGGCA
CTGTATGTGACATGTGGCCAGTGGCGGCTAGCTAAGGTCTGTTGCAGGCC
TGTGCAGGAGGCCAAATACTGATCTGCAATGATCATGGTCTCACTCAGCT
CATCATTTTCATTCACTGGAAGGGGAAACAAAGAAATGGCAAAAGGCAGC
CATGATATGAAATGGCAGATAATTACCTGATGTATGCTTTACACACAGCA
CATGGGGTTGATTGATTCCACACCTGGGCCGCCGGAGTTTGACACGAATT
CCCACTGTACTTTGTAGCCCACCTTGAAAATACCAGACCTATTTTTCACA
GGTTAAAGGAACCATGTGACCTCTACAGAGGAGAAGAAAATGAACAAGGA
AGGTTTCAGGAGAATGTGAGCCACATGCACTAGAGATCTAAGCCTGATGT
AAGGCAAGATCTAAGGCAGCTGCTGTGGCTAAAGGAAGTCTAAAGGCCTT
ACCATATCAGTGATCAGACATTTCCCATTTACACATGTGACTAAGGGTTT
GTTCATATCAGAGAAGTGCTCAATGTGCAAGCACAGGAGTTCTACCACAA
GCACCCATGTACAAACTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no276_h10.g1 MSMg01no276_h10.g1 CHROMAT_FILE:
MSMg01no276_h10.g1 PHD_FILE: MSMg01no276_h10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:16:24 2005
         (283 letters)



>mm_chr18_21833712_21834394
          Length = 683

 Score =  505 bits (261), Expect = e-147
 Identities = 276/281 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cactctgttcgcttgaatgactccctgaacaataccaacttagtaaccttttcagtactg 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct: 481 cactctgttcgcttgaatgactccctgaacaataccaacttagtaagcttttcagtagtg 422

                                                                       
Query: 61  ggagggggagggcactgtatgtgacatgtggccagtggcggctagctaaggtctgttgca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ggagggggagggcactgtatgtgacatgtggccagtggcggctagctaaggtctgttgca 362

                                                                       
Query: 121 ggcctgtgcaggaggccaaatactgatctgcaatgatcatggtctcactcagctcatcat 180
           ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 361 ggcctgtgcaggaggacaaatactgatctgcaatgatcatggtctcactcagctcatcgt 302

                                                                       
Query: 181 tttcattcactggaaggggaaacaaagaaatggcaaaaggcagccatgatatgaaatggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tttcattcactggaaggggaaacaaagaaatggcaaaaggcagccatgatatgaaatggc 242

                                                    
Query: 241 agataattacctgatgtatgctttacacacagcacatgggg 281
           ||||||||||||| |||||||||||||||||||||||||||
Sbjct: 241 agataattacctgctgtatgctttacacacagcacatgggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)