BAC Information

Click to search

BAC

Clone NameMSMg01-277E14
Chromosome18 (Build37)
Map Location 27,553,084 - 27,553,370
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665977
Downstream geneEG665646, EG271505
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-277E14.T7 (MSMg01no277_e14.b1)MSMg01-277E14.TJ (MSMg01no277_e14.g1)
ACCAG415231AG415232
length740745
length of high quality
(start - end)
316 (46 - 361)234 (128 - 361)
definitionCHROMAT_FILE: MSMg01no277_e14.b1 PHD_FILE: MSMg01no277_e14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:23 2005CHROMAT_FILE: MSMg01no277_e14.g1 PHD_FILE: MSMg01no277_e14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGAAAGATGCTTGAAAAGAATGTGGAATTTTACACTATTGGACAA
AATTAGATTTTTTTTTTATTCACCCAGCCTTTGAGACTGGTGCTGCTGCT
TAGTGGTGGTGGTGTTGATGGTGCTGGTGATGGCACATTGGTGTTGATAC
TCCTGGTGCTGCTGGTGGTGCTAATGCTTGTCCTGGTGCTGGTGTTGGTG
CTGGTGCTGGTGCTGGTACTGGTCCTGGTGCTGGTACTGGTTCTGCTGTT
TGTGCTCATATTAGTGCTGTTGCTGATGGTGGCAGTGTTGGTGCTGGTGT
TGCTGCTTGTATGTTTTCCCCCGCCCCCGCCGATGGCACTGAATGTGCTG
GGAGTAGCCTGTGGTGGTCTTTGATTATAGAAAATCTGAAACACATACAC
ACAACACACACACACACACACACACACACACACACACACACACACACACA
CACCTCTATATTGCATGATTTGAATTCGAGAAATAATGCTTTCCAGAGTT
CATGACTCCTAAGAACACAGACTGCCATTTGGTGATGTATTAAAATAATT
TCAGTGAATCTTTAATATAATAATGAAATGATTGGGTAATATTTCTTTCT
TTCTTTTTTTTTTTCTGAAAAGGATAAGGGCTAGATTGCCTAAGATTACT
CCTCTGTGCGTATGGAACAACAATGGATCTAGCTTCTATT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGCCCTTCAAAGGAAAATAACGGA
AAAAGACCAATACAAGGATTTAACCTACACCCTAGGAAAAGCAAGAAAGT
AATCCTTAAACAAACCTAAAAGAAGATAGCCACAAGAAGTGAATCCCAAC
TCTAAAAACAAAAATAATAGGAAGCAATAATTACTTTTCCTTAATATCAG
TTAATATCAATGGGCTCAATTCCCCAATAAAAAGACATAGACTAACAGAC
TGGCTACACAAGCAGGACCCAACATTTTGCTGCTTACAGGAAACCTATCT
CAGGGAAAAAAGATTATTTAACCTCACAACGAAAGGCTGGAAAATAATTT
TCCAAGCAAATATTCTGAAGAAACAAGCTGGAGTAGCCAATCTAATATCG
AATAAAATTGACTTCCAACCCAAAATTATCAAAAAAGACAAGGAGAGGCA
CTTCATAATCATCAAAGTTAAAACCTTCCAAGAGGAACACTCAATTCTGA
ATATCTATGCTCCAAATACAAGGGCAGCCACATTCATTAAAGAAACTTTA
GTAAAGTTCCAAGCACACATTGCTCCTCACACAATAATAGTGGGAGACTT
CAACACCACACTCTCATCAAGGGACAGATCCTGGAAACAGAAACTAAACA
GAGACACATGGATACTAACAGAAGTTATGAAAAAAATGGATTTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no277_e14.b1 MSMg01no277_e14.b1 CHROMAT_FILE:
MSMg01no277_e14.b1 PHD_FILE: MSMg01no277_e14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:17:23 2005
         (316 letters)



>mm_chr18_27552880_27553598
          Length = 719

 Score =  470 bits (243), Expect = e-137
 Identities = 280/299 (93%), Gaps = 15/299 (5%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagaaagatgcttgaaaagaatgtggaattttac-actattggacaaaattaga- 62
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| 
Sbjct: 205 gaattcagaaagatgcttgaaaagaatgtggaattttacaactattggacaaaattagat 264

                                                                       
Query: 63  -ttttttttttattcacccagcctttgagactggtgctgctgcttagtggtggtggtgtt 121
            |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttttttttttattcactcagcctttgagactggtgctgctgcttagtggtggtggtgtt 324

                                                                       
Query: 122 gatggtgctggtgatggcacattggtgttgatactcctggtgctgctggtggtgctaatg 181
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gatggtgctggtgatggcgcattggtgttgatactcctggtgctgctggtggtgctaatg 384

                                                                       
Query: 182 cttgtcctggtgctggtgttggtgctggtgctggtgctggtactggtcctggtgctggta 241
           ||||||||||||||||||      ||  ||    ||||||||||||||||||||||||||
Sbjct: 385 cttgtcctggtgctggtg------ct--tg----tgctggtactggtcctggtgctggta 432

                                                                      
Query: 242 ctggttctgctgtttgtgctcatattagtgctgttgctgatggtggcagtgttggtgct 300
           ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct: 433 ctggttctgctgtttgtgctcatattagtgctggtgctgatggtggcagtgttgctgct 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 719
Length adjustment: 9
Effective length of query: 307
Effective length of database: 710
Effective search space:   217970
Effective search space used:   217970
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)