BAC Information

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BAC

Clone NameMSMg01-280I11
Chromosome18 (Build37)
Map Location 88,721,665 - 88,721,892
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC329008, LOC100039961, LOC100039972, LOC623177
Downstream geneLOC665497, LOC100040003, LOC623208, Socs6, Rttn, Cd226, Dok6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-280I11.T7 (MSMg01no280_i11.b1)MSMg01-280I11.TJ (MSMg01no280_i11.g1)
ACCAG417598AG417599
length733729
length of high quality
(start - end)
617 (72 - 688)289 (75 - 363)
definitionCHROMAT_FILE: MSMg01no280_i11.b1 PHD_FILE: MSMg01no280_i11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:21:23 2005CHROMAT_FILE: MSMg01no280_i11.g1 PHD_FILE: MSMg01no280_i11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:21:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAAGATCCGCGGA
ATTCTCACCTGATGCCTAACGAATAGCAGAGAAGAACCTGAAAAAATGAT
CAACATCCTTAATCATCATGGACATGCAAATCAAAACAACCCTGAGATTC
TACCTCACTCCAGTCAGAATGGCTAAGATCCAAAAATTCAGGTGACAGTA
GATGCTGGCGAGGATGTGGAGAAAGAGGAATACTCCTCCATTGTTGGTGG
GATTGCAAACTTTTACAACCACTCTGGAAATCAGTCTGTCAGTTCCTCAG
AAAATTGGATATAGTACTACTGGTAAGTTCTTGAAATCCCTCTCCTGGGC
ATGTATCCAGAAGATGTTCCAACCAGTAAGAAGGACACATGCTCCACTAT
GTTCATAGCAGCCTTATTCACAGTAGCCAGAAGCTGGAAAGAACCCAGAT
GCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAATG
GAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGGCAA
ATGAATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACCCAATCACAAA
GGAACTCACACAATATGTACTCACTGATAACTGCATATTAGCCCAGAAAC
TTAGGTTACCCAAGATATAAGATACAATTTGCTAAATGTATGAAACTCAT
GAAGAATGATGACCAAAGTGTGGACACTTTGAN
ACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACTTGCTCCTTTAGTTGTGACATCTG
TATATTTCTATGAACAATGAGACCCCCTATCATTGGGTTTTCAGGTCTTA
GATTTCACAAAGCTATCAGCAACTACACCCTATGTCACACACCCTCTGTG
ATGGTTTGTATATCCTTGGACCAGGGAGTGGCACCATCTGGAGGTATGGC
CTTGTTGGAATAGATGTGACCTGGTTGGAATGGGTGTGTCACTGTGGGTG
TGGGCATAAGATCCTCACCCTAGTTGCCTAGAAGTCAGTCTTCCACTAGC
AGCCTTTGGATGATATACATAGAACTCTCAGCTCCTCCTGTGCCATGCCT
GCCTGGATACTGCCATGCTCCCATCTTGATGATAATGGACCGAACCTCTG
AACCTGTAAGCCAGCCTCAATTAAATGTTGTTTTTTATAAGACTTGCCTT
GGTCATGGTGTCTGTTCACAGCAGTAAAAACCTAACTAAGATACCCTCCC
ACCCAGGTCCTAAATCTTAACTATCAGACAGAGAGTCATACCCTTGTCTC
TCATGGTTCTCAGGCCTTCAGGTCTGGCTGAATCATAGTACATATTTTCC
AGACTCTTCAGTTTTAGGTAGCAGATCATGAGTCTTTGCAGACTCCACAT
CAGTTGGAACCAATCACTACATTAATATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no280_i11.g1 MSMg01no280_i11.g1 CHROMAT_FILE:
MSMg01no280_i11.g1 PHD_FILE: MSMg01no280_i11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:23 2005
         (289 letters)



>mm_chr18_88721465_88722153
          Length = 689

 Score =  379 bits (196), Expect = e-109
 Identities = 220/228 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   acttgctcctttagttgtgacatctgtatatttctatgaacaatgagaccccctatcatt 60
           |||||||||||| |||||||||||||||||||||||| ||||||||||  ||||||||||
Sbjct: 201 acttgctccttttgttgtgacatctgtatatttctatcaacaatgagaggccctatcatt 260

                                                                       
Query: 61  gggttttcaggtcttagatttcacaaagctatcagcaactacaccctatgtcacacaccc 120
           |||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 261 gggttttctggtcttagatttcagagagctatcagcaactacaccctatgtcacacaccc 320

                                                                       
Query: 121 tctgtgatggtttgtatatccttggaccagggagtggcaccatctggaggtatggccttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctgtgatggtttgtatatccttggaccagggagtggcaccatctggaggtatggccttg 380

                                                           
Query: 181 ttggaatagatgtgacctggttggaatgggtgtgtcactgtgggtgtg 228
           ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttggaataggtgtgacctggttggaatgggtgtgtcactgtgggtgtg 428


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)