BAC Information

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BAC

Clone NameMSMg01-280L01
Chromosome18 (Build37)
Map Location 63,968,931 - 64,127,155
singlet/doubletdoublet
Overlap geneWdr7
Upstream geneApcdd1, Napg, 9430028L06Rik, 9030411M15Rik, LOC627792, Txnl1
Downstream geneLOC629436, LOC667773, St8sia3, LOC433193, Onecut2, LOC667783, LOC100043304, Fech, Nars, Atp8b1, LOC629480
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-280L01.T7 (MSMg01no280_l01.b1)MSMg01-280L01.TJ (MSMg01no280_l01.g1)
ACCAG417719AG417720
length757759
length of high quality
(start - end)		295 (388 - 682)294 (74 - 367)
definitionCHROMAT_FILE: MSMg01no280_l01.b1 PHD_FILE: MSMg01no280_l01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:21:36 2005CHROMAT_FILE: MSMg01no280_l01.g1 PHD_FILE: MSMg01no280_l01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:21:36 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,126,861 - 64,127,155)(63,968,931 - 63,969,221)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCCGCGG
AATTCTGCTTATATTTTTCTTCACAAATTTTAAGTATTGAAGAAAGAAAA
ATGACAGAATGGCTAGTTCCTGAAGCCCGGCGGTGCTTGAGTTTTCGTCT
CTGACTACTTTAGTCAGTTTGCACATGGCCCCTCACCAGTGTCTCATCAG
TATTTACCGTTTATGTGATGTCTCAGCAGATCTAAACAGTGGAAAGATAA
AGTTGTAGTAAAAATGTATATTTTACTTACACAAATAAGATAATGGCTGA
CGTTTTAAAAGTGAGGCTCCTGGCACTGATTGTAGGAACTGTTTAGAATG
TGAACTGTGCTTCCACTTTGTTTATCAGCAATCCTACGACAATAGTGAGT
GACTTTGACCTCAGTGTATAAAATAAATTTATCACTGAAATGACATGCCG
GCTGCCAGTCAGTATGTGTCTCTCATTTGTTAGGGGCCCTCCTGCTGTGA
CTCCCTCATTAGGATTTGCTTTCACTTCCTGGGCAAATGACAAGTAGAAA
ATGAGGCAGTTTCTTTCTTGACCAAACTTAATCCAGAAAAAAATGAGATG
ACAGCTGCAGCCACCCAAGTGTTACAGAGCATTTTCCAAGTGTTTGTTGT
GTACTTGAAGCACCAGGTCAGGGAACGAGGCAGTCAACAGGTTACCTCAC
CTTTCTAGTCTAGGGCCACAGTGGATAGAAATGTTTCAGAAGCTGAGCAT
ATTTTGT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTTTCCGAATTCTGGATGAGCATGAATACAATTTTA
TGCATGTAATCTTTGAATAATTATTTTCCCATTTATTCATTAATTAATAT
TTACGTTGTTCCCACTAAATAGAAGTGTATATACTTACTACTATATGTAT
TACTGTTGTGAACTTAGGTGTCTACTCTTTCATTACAATCTTGCTTTTAA
TTATTTTGGAACTATATTGGAAAGAAGAATTTATTGGATTATAGTATAGA
TCTGTTTTTGTTTTTTAAAGAAACCTTATATTTTCTGTAACAATTATACT
TTACATTCTCACCAGTAGTGTTTTTAACATCCCCCCCCCTCATTTTCCTT
GACTCCTCCCCCTTTAAATACCAGTTATCTTAAAAGGCATGAAGTGCTAT
TGGGGCTTTGATTTCCACTTTGCTAGTTACTGGTCACGTTTAGCATCTGT
TCCTGTGTTTATTTACCATTTATATGTATATCTTCTATGGAAGTATATTT
TTTGTGCCCATTATCTACTTTAGGATCATGTTGGAATTTATTGTTGTTGA
GTTCTAACCATTTTCTGAAACATTTGTAGCTGTGGCTGGCTTGAACCCAC
TATGTACATTTGGGTGGCCTAGAAGTTGCAGTAGTGTTCTTACCTTTGCT
GCCAAAGATAAGATGTGTACCATAATCCCTAACCCAAGGATTGTGTAAAT
TTGCTGTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no280_l01.b1 MSMg01no280_l01.b1 CHROMAT_FILE:
MSMg01no280_l01.b1 PHD_FILE: MSMg01no280_l01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:36 2005
         (295 letters)



>mm_chr18_64126661_64127355
          Length = 695

 Score =  555 bits (287), Expect = e-162
 Identities = 293/295 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gacaatagtgagtgactttgacctcagtgtataaaataaatttatcactgaaatgacatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 gacaatagtgagtgactttgacctcagtgtataaaataaatttatcactgaaatgacatg 436

                                                                       
Query: 61  ccggctgccagtcagtatgtgtctctcatttgttaggggccctcctgctgtgactccctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 ccggctgccagtcagtatgtgtctctcatttgttaggggccctcctgctgtgactccctc 376

                                                                       
Query: 121 attaggatttgctttcacttcctgggcaaatgacaagtagaaaatgaggcagtttctttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 attaggatttgctttcacttcctgggcaaatgacaagtagaaaatgaggcagtttctttc 316

                                                                       
Query: 181 ttgaccaaacttaatccagaaaaaaatgagatgacagctgcagccacccaagtgttacag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 ttgaccaaacttaatccagaaaaaaatgagatgacagctgcagccacccaagtgttacag 256

                                                                  
Query: 241 agcattttccaagtgtttgttgtgtacttgaagcaccaggtcagggaacgaggca 295
           ||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 255 agcattttccaagtgtttgttgtgtacttgaagcaccaggtcaggaaatgaggca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 695
Length adjustment: 9
Effective length of query: 286
Effective length of database: 686
Effective search space:   196196
Effective search space used:   196196
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no280_l01.g1 MSMg01no280_l01.g1 CHROMAT_FILE:
MSMg01no280_l01.g1 PHD_FILE: MSMg01no280_l01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:36 2005
         (294 letters)



>mm_chr18_63968728_63969421
          Length = 694

 Score =  509 bits (263), Expect = e-148
 Identities = 284/291 (97%)
 Strand = Plus / Plus

                                                                       
Query: 4   tggatgagcatgaatacaattttatgcatgtaatctttgaataattattttcccatttat 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 tggatgagcatgaatacaattttatgcatgtaatctttgaataattattttcccatttat 263

                                                                       
Query: 64  tcattaattaatatttacgttgttcccactaaatagaagtgtatatacttactactatat 123
           | || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 264 taatgaattaatatttacgttgttcccactaaatagacgtgtatatacttactactatat 323

                                                                       
Query: 124 gtattactgttgtgaacttaggtgtctactctttcattacaatcttgcttttaattattt 183
           ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gtattactgctatgaacttaggtgtctactctttcattacaatcttgcttttaattattt 383

                                                                       
Query: 184 tggaactatattggaaagaagaatttattggattatagtatagatctgtttttgtttttt 243
           ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||
Sbjct: 384 tggaactatattggaaagaagaatttattggattatagggtagatctgtttttgtttttt 443

                                                              
Query: 244 aaagaaaccttatattttctgtaacaattatactttacattctcaccagta 294
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aaagaaaccttatattttctgtaacaattatactttacattctcaccagta 494


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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