Query= MSMg01no288_p05.b1 MSMg01no288_p05.b1 CHROMAT_FILE:
MSMg01no288_p05.b1 PHD_FILE: MSMg01no288_p05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:23:09 2005
(284 letters)
>mm_chr18_57034046_57034727
Length = 682
Score = 480 bits (248), Expect = e-140
Identities = 272/284 (95%), Gaps = 10/284 (3%)
Strand = Plus / Minus
Query: 5 gaattccaaacccattgac----agtctaaaatagattttagcccattgtccaactcttt 60
||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 482 gaattccaaaccc----acaggtagtctaaaatagattttagcccattgtccaactcttt 427
Query: 61 ttctcaacaaacacgctaccaccgcagcaaaagaggaaacattagtttcacccctccccc 120
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 426 ttctcaacaaacacgctacca-agcagcaaaagaggaaacattagtttcacccctccccc 368
Query: 121 agtcccttaatctgccagagaaggcaaagggtggctagatagtccccagataaaactcgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 agtcccttaatctgccagagaaggcaaagggtggctagatagtccccagataaaactcgg 308
Query: 181 tttgcacactggaaccccataggcacacctagccattgatgatttattttatttggccat 240
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 307 tttgcacactggaaccccataggcccacctagccattgatgatttattttatttggccat 248
Query: 241 aatgagtttttcaatacatttatataagctatggatcatctata 284
|||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 247 aatgagtttttcaatacatttatataagctat-gatcatctata 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 682
Length adjustment: 9
Effective length of query: 275
Effective length of database: 673
Effective search space: 185075
Effective search space used: 185075
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no288_p05.g1 MSMg01no288_p05.g1 CHROMAT_FILE:
MSMg01no288_p05.g1 PHD_FILE: MSMg01no288_p05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:23:10 2005
(292 letters)
>mm_chr18_56868986_56869676
Length = 691
Score = 526 bits (272), Expect = e-154
Identities = 287/292 (98%), Gaps = 1/292 (0%)
Strand = Plus / Plus
Query: 1 agtcttcgccacagccagcatattttgggggttggtatctgattcagactgccctgggtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtcttcgccacagccagcatattttgggggttggtatctgattcagactgccctgggtt 260
Query: 61 tctttccgtatatctgaaccctatttccctgtctccctttcttaggattgtgtatactac 120
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctttccgtatatccgaaccctatttccctgtctccctttcttaggattgtgtatactac 320
Query: 121 cttgtcagatatttaaagatcggtaagagtgtcagtttcccttttgcttttgagacaaga 180
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 321 cttgtcagatatttaaagatcggtaagagtgtctgtttcccttttgcttttgagacaaga 380
Query: 181 agtcactttcttcaccaaggttgtctgcacctcttgacctaaagttgatactcccgcagc 240
||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct: 381 agtcactttcttcaccaag-ttgtctgaacctcttgacctaaagttgatactcccgcagc 439
Query: 241 aaccaggaatcacaggcttgcccacccattttttaagtatatgggtgttttg 292
||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 440 aaccaggaatcacaggcttgcccacccatttttaaagtatatgggtgttttg 491
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 691
Length adjustment: 9
Effective length of query: 283
Effective length of database: 682
Effective search space: 193006
Effective search space used: 193006
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
