BAC Information

Click to search

BAC

Clone NameMSMg01-290E01
Chromosome18 (Build37)
Map Location 9,101,916 - 9,102,154
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665132, EG433158, EG545242, LOC665161
Downstream geneFzd8, 9430022F06Rik, Ccny, LOC665176, LOC665184, EG639618, LOC100039755, Cetn1, LOC225155, Colec12, LOC665111, LOC100039787, EG433161, Thoc1, Usp14, Rock1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-290E01.T7 (MSMg01no290_e01.b1)MSMg01-290E01.TJ (MSMg01no290_e01.g1)
ACCAG419582AG419583
length730725
length of high quality
(start - end)
663 (68 - 730)239 (129 - 367)
definitionCHROMAT_FILE: MSMg01no290_e01.b1 PHD_FILE: MSMg01no290_e01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:44 2005CHROMAT_FILE: MSMg01no290_e01.g1 PHD_FILE: MSMg01no290_e01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCACCTGTACCATACCGAATGACAGAGAAGCACCTGAAAAATTGT
TCAGCATCCTTAATCATTAGGGCAATGCAAATCAAAGCAACGCTGAGATT
CCACCTCACACCAGTCAGAATGGCCAAGATCAAAAACTCAGGTGACAGCA
GATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGG
GATTGCAAGCTTATACAACCACTCTGGAAATCAGTCTGGTGGTTCCTCAG
AAAATTGGACATAGTACTACTGGAAGATCCAGCGATACCTCTCTTGGGCA
TATATCCGGAAGATGTTCCAACTGGTAAGAAGGACACATGCTCCACTATG
TTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATA
CCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAATGG
AGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATACCTAGGCAAA
TGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAAGCCAATCACAAAA
GAACTCACATGATATGCACTCACTGATAAGTGGATATTAGCGCAGAAACT
CAGAATACCCAAGATACAAGATACAATTTGCAAAACGCATGATATTCAAG
AAGAACGAAGACCAAAGTGTGGACACTTTG
CGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGTTGATAAATATGCATAATATG
GGCCAGCCACAGAATGTGGTATCACCCAGATAAAGCACTAACAATAGTAA
GGCAGGAACCATGGCTGCAAGAGAAACTGAGGCCAGAGAGGTTCTCATAA
GAGTCTGGTGAAAAAGCAGAATGGAAGAGGAAAGTTAAGACCAGGCTTAA
GGAATCTCAAGTCAGTCAGCTATGCATGTGGTGGTAAGAGAAGGAATAAT
GAATCAACATGCATGCTTTATGTCCCTGGTCTAATGCTACCACGAAGCCA
GAACTTGCTTACTACATATCACATGCAGCCATGTCACCTCTGTCTTCTTG
TTGGGTCCCTACAACCACATTGTAAAGAAGTGGGACAAATATTAAGATGA
CTTAAAGTTAGGGAAATCAAAGTTACTGGACATAACAAGTAGGCTAGGGA
GATGACGCAGTCAATGAAGTACTTGTCTTGCAAACACATGGATACTGCAT
TGCTACCTCATAGCCCACATTTAAAAAAAAAAAAAAGTCACGTGTAGCAC
ACGAAGGAAGTAAATATAGGAGAACCATGGGGTTATAAGGCCAGACAGCA
TGGCGTACTTGGGGAGCTTTGGGCTAGTGAGAGCTCCTATCCCAGTAAAA
CAAGGAAGATGACTCCTAAGTAGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no290_e01.g1 MSMg01no290_e01.g1 CHROMAT_FILE:
MSMg01no290_e01.g1 PHD_FILE: MSMg01no290_e01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:45 2005
         (239 letters)



>mm_chr18_9101716_9102354
          Length = 639

 Score =  408 bits (211), Expect = e-118
 Identities = 232/239 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   gataaagcactaacaatagtaaggcaggaaccatggctgcaagagaaactgaggccagag 60
           |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct: 201 gataaagcactaacaatagtaaggcaggaaccatagctgcaagagaaactgaggcctgag 260

                                                                       
Query: 61  aggttctcataagagtctggtgaaaaagcagaatggaagaggaaagttaagaccaggctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 aggttctcataagagtctggtgaaaaagcagaatggaagaggaaagttaagaccaagctt 320

                                                                       
Query: 121 aaggaatctcaagtcagtcagctatgcatgtggtggtaagagaaggaataatgaatcaac 180
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 321 aaggaatctcaagtcagtcagctatgcatgtgatggtaagagaaggaataatgaatcaac 380

                                                                      
Query: 181 atgcatgctttatgtccctggtctaatgctaccacgaagccagaacttgcttactacat 239
           |||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 381 atgcgtgctttatgttcctggtctaatgctaccacgaagccaaaacttgcttactacat 439


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)