BAC Information

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BAC

Clone NameMSMg01-291G13
Chromosome18 (Build37)
Map Location 68,065,475 - 68,244,325
singlet/doubletdoublet
Overlap geneLOC667939, D18Ertd653e
Upstream geneGnal, Chmp1b, Mppe1, Impa2, B430212C06Rik, Cidea, Tubb6, Afg3l2, Slmo1, Spire1, Cep76, Tnfsf5ip1, Ptpn2, Seh1l
Downstream gene4933403F05Rik, Rnmt, Mc5r, Mc2r
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-291G13.T7 (MSMg01no291_g13.b1)MSMg01-291G13.TJ (MSMg01no291_g13.g1)
ACCAG420414AG420415
length745742
length of high quality
(start - end)
344 (67 - 410)217 (425 - 641)
definitionCHROMAT_FILE: MSMg01no291_g13.b1 PHD_FILE: MSMg01no291_g13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:26:11 2005CHROMAT_FILE: MSMg01no291_g13.g1 PHD_FILE: MSMg01no291_g13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:26:11 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,243,982 - 68,244,325)(68,065,475 - 68,065,688)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAGAGGATCCGCGGAATT
CAAGAGTATCCAGAATTAACATAAAGGTGAAGTTACCTTCTCCAGTAAGC
TACTGAGACATGTGTCACCGAAACCAAGGGACAAAGAGGACACTTGTCTT
CCTTCTGTGGATCTGCATGATACCAAGCATTCCACAAAGGAATGCCCAGG
TAGTATCATTCACTTTGTTTCTTTTCTTTTTTTTTTTTTTTTGGTTTGTT
TTGTTTTTTGAGCCGGTTTCTCTGTATAGTATAGCCCTGGCTGTCCTGGA
ACTCACTTTGTAGACCATGTTGGCCTCGAACTCAGAAATCCGCCTGCCTC
TGCCTCCCAAGTGCTGGGATTAAAGGCGTGCGCCACCACTGTCCGACATT
CATTCTGCCCCCCAACCCATAGGGACCCTTGCTTTCTTGTAACATAGCAG
TCAGCAGCAGCGAAACTCCAAATTCCTAGTGTTCTCAGTACTGGGGAGGA
GATGCCAGGGCTTGGATTCAGGTCTTAGTCACGCATGCTAGGCAAATGTT
CTATCAGAGAGCTATTTCCTGAGCCCTGTAATTCTATGAACACACACTGA
AATTTGATGCAAAAGTACAGGTAGACTTTATCAGATACACACACACACAC
ATACACACACACACATACACATATACACACACACATACACACACACATAC
ACACCCATATATATACACACACATACACACACATACACATACACA
ACTGTGGGAGGCCTGGCGGCCGCCGGTTCGNCACGCGGGGGNNGAACNAN
AGAATTATCAGCAGGAGGCCNANNNCCNGCNCNNNNNGANGNNCNCNGNC
NCNGGGTTTTTTATCCACAAAGNACGCCCANNAANNNACNGAGCGACNCA
NCNACNTCNCTTGCACACGGNGNNNNTTTGAAGNNAGCATTTTGAACTAT
CAGGAACTTCATATGTCTGTGNTTGGTTTCTGGGAGCTGATTGTTTCCTT
TGGTTCAGCTGCGTCTATCTATGACTTCACCTATTTTGGGTTTTGATTTG
CTTTACTCTTTTTTTTTAACCAGCCCNCNGNCACAGNCCNGAAGAGCAGC
TTTTTTTTTCCCCCGCCCCCCCCCGGTCAGCCTAGCTGGAAATGCTGGCT
GGCTCCCCCACCTTTGAAAAACAAATTATCAATGGGTTTATGGTATCATT
AGTCTTACTCACAGGCTTCTCCTTCAGGAGCTTATGATCTCTTGCTCCCT
CTGGTGTGCGTCTGTGGAGCTACAGGTCTCCTGGGATAGAAAGGTCTTGT
GTTCTGTGTCCTCCAAACATCCACAGTACAGACAGTCCCCACTTTACAAG
GGGTTGAGTGAAAAGTTCTCTACTAAGGTCTGCATTCTGGAAACCATTGA
TTTGCCTCCTCTGCCAGCGCAGTGATGTATAGTCCAACATGGCAGAGACT
CAACTGCTCTGTCATCAGCCGTAGGACAACAGCAATAAGCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no291_g13.b1 MSMg01no291_g13.b1 CHROMAT_FILE:
MSMg01no291_g13.b1 PHD_FILE: MSMg01no291_g13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:26:11 2005
         (344 letters)



>mm_chr18_68243980_68244723
          Length = 744

 Score =  489 bits (253), Expect = e-143
 Identities = 315/349 (90%), Gaps = 26/349 (7%)
 Strand = Plus / Minus

                                                                       
Query: 1   taacataaaggtgaagttaccttctccagtaagctactgagacatgtgtcaccgaaacca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 taacataaaggtgaagttaccttctccagtaagctactgagacatgtgtcaccgaaacca 287

                                                                       
Query: 61  agggacaaagaggacacttgtcttccttctgtggatctgcatgataccaagcattccaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 agggacaaagaggacacttgtcttccttctgtggatctgcatgataccaagcattccaca 227

                                                                       
Query: 121 aaggaatgcccaggtagtatcattcactttgtttcttttctttttt--tttt-tttt--- 174
           |||||||||||| ||||||||||||| |||||||||||||||||||  |||| ||||   
Sbjct: 226 aaggaatgcccaagtagtatcattcattttgtttcttttcttttttggttttgttttgtt 167

                                                                       
Query: 175 ttg----gttt-----------gttttgttttttgagccggtttctctgtatagtatagc 219
           |||    ||||           ||||||||||||||| ||||||||||||||||     |
Sbjct: 166 ttgttttgttttgttttgttttgttttgttttttgagacggtttctctgtatag-----c 112

                                                                       
Query: 220 cctggctgtcctggaactcactttgtagaccatgttggcctcgaactcagaaatccgcct 279
           |||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||
Sbjct: 111 cctggctgtcctggaactcactttgtagaccaggatggcctcgaactcaaaaatccgcct 52

                                                            
Query: 280 gcctctgcctcccaagtgctgggattaaaggcgtgcgccaccactgtcc 328
           |||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct: 51  gcctctgcctcccaagtgctgggattaaaggcatgcgccaccaccgtcc 3


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space:   246225
Effective search space used:   246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no291_g13.g1 MSMg01no291_g13.g1 CHROMAT_FILE:
MSMg01no291_g13.g1 PHD_FILE: MSMg01no291_g13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:26:11 2005
         (217 letters)



>mm_chr18_68065274_68065890
          Length = 617

 Score =  398 bits (206), Expect = e-115
 Identities = 212/214 (99%)
 Strand = Plus / Plus

                                                                       
Query: 2   ttatcaatgggtttatggtatcattagtcttactcacaggcttctccttcaggagcttat 61
           |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct: 202 ttatcaatgggtttatggtatccttagtcttacccacaggcttctccttcaggagcttat 261

                                                                       
Query: 62  gatctcttgctccctctggtgtgcgtctgtggagctacaggtctcctgggatagaaaggt 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gatctcttgctccctctggtgtgcgtctgtggagctacaggtctcctgggatagaaaggt 321

                                                                       
Query: 122 cttgtgttctgtgtcctccaaacatccacagtacagacagtccccactttacaaggggtt 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 cttgtgttctgtgtcctccaaacatccacagtacagacagtccccactttacaaggggtt 381

                                             
Query: 182 gagtgaaaagttctctactaaggtctgcattctg 215
           ||||||||||||||||||||||||||||||||||
Sbjct: 382 gagtgaaaagttctctactaaggtctgcattctg 415


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 217
Length of database: 617
Length adjustment: 9
Effective length of query: 208
Effective length of database: 608
Effective search space:   126464
Effective search space used:   126464
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)