BAC Information

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BAC

Clone NameMSMg01-292B13
Chromosome18 (Build37)
Map Location 63,670,578 - 63,670,940
singlet/doubletsinglet
Overlap genenone
Upstream geneFbxo38, Spink10, EG408198, 2700046A07Rik, Apcdd1, Napg, 9430028L06Rik, 9030411M15Rik
Downstream geneLOC627792, Txnl1, Wdr7, LOC629436, LOC667773, St8sia3, LOC433193, Onecut2, LOC667783, LOC100043304, Fech, Nars
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-292B13.T7 (MSMg01no292_b13.b1)MSMg01-292B13.TJ (MSMg01no292_b13.g1)
ACCAG420910AG420911
length797758
length of high quality
(start - end)
367 (45 - 411)236 (128 - 363)
definitionCHROMAT_FILE: MSMg01no292_b13.b1 PHD_FILE: MSMg01no292_b13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:04 2005CHROMAT_FILE: MSMg01no292_b13.g1 PHD_FILE: MSMg01no292_b13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAGTCTCCTCTTGTCTTCCTACAGAAGACAGTGTTCTTCTGGCTAC
CTTCAGGTCAAAATGTATAGCTCTTGGCTCTTCCAGCACCATGTCTGCCT
GCAGGCTATCATGCTTCCAGCCATGATGATAATGACTGAACCTCTGAAAC
TGTAAGCTAGCCCCAGTTAAATGTTTTCTTTTATAAGAGTTGCCTTGATC
ATGGTATCTCTTCACAGCAATGAAACCCTAAGACAGATCCCTCATAGGAT
ACATATGGGCCTGAGCCCTGTGTAGCCTGCTGCAAAGCCTCTAGTTGACA
GACAATTGCTTTGTTCTAGTCATTCACTCACTTTCCGTCATTTATCTTAA
TTCTCCCCAACCCCACCCTGTTTTGAACATGACAGTGGATGAGTTCAGTC
TCCACCTTCCCTCTTATAGCCCACAGTGTGATAGAGCCATACAGTTAAAT
TAGGCCAATTCACTTTGTGAAGTCATGCTTGCGTCTAGTTGGCCATTAAT
AACTTTATATTTACTTTCCCTTATCTATTTTAGTTCCATCCTATCCTTTT
TCCTCTTATCACTTCCATCTTCTTACGCTGTCTTACTTCTCCCCCCCCTT
TTCCTCATCTTTCTCTCCTCTTTTACTCCAATGCCTTTCCTTTTTTTTTC
CCACCCTTTTTTTTATTATTACCTTTTTTCATCCCCCCATTTCTATCCTT
TTTTTATTCCGATTTATCTCCCTATTATACTTCATTTTTTTATCTCG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGCATAGCGACACACTATTGGCT
TATTCAAACATTAACAGAAAGATTACCTGTACGTGCAGGGTGTCAGAGTT
CTGTGAGTTGTTGACTCAGTTCAGATAGCCCTGTTATGTCTTTACATTCC
CTTTATCTTATGGTCAAGATGTTCCCAGGAATGTTTTAACTACGGGGCAT
ACCCAGGTTTGTTTTTCTCTTTTCTCAGCCCCAGGCAGCCTCTAGGCTCA
CAAACAACCAGCAATTTCTGAGTTCTTTATATGACTTACAGGTCTTGAAA
TTTCATCTTTCTTTCTTTTTCAGACCCCCGCATATAATGCTCAGCTCTTT
CTCTGGCACCATGCCCCCCCGCTTGCTGACATGATATCTGCCATGATCAT
AATGGCTGAACCTCTGAAGCTATAAGCCAGCTCCAACTAAATGTTGTTCT
TTATAAGAGTTGCCTTGGTCATGGCGCCTCTTCACAGCTATGAATCTCAT
ATTAAGACAGGAGTCATTTGGACTATCCTGACTAAACCTTCCTTCACTGG
TTTCTGGTATCTGGTGTTGGCGTTCTCTGAGGTATATTTTTATTGTTTCC
CCTATTTCCTGTTTTCCTCCCGCTCTTATTTTCTTTTTATTTACTTCTTT
ACTCATTTCTCTCTATTCCCTCCTCTTTTACTTTTTTTTCTGTCTCTCTT
TCTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no292_b13.b1 MSMg01no292_b13.b1 CHROMAT_FILE:
MSMg01no292_b13.b1 PHD_FILE: MSMg01no292_b13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:27:04 2005
         (367 letters)



>mm_chr18_63670375_63671141
          Length = 767

 Score =  679 bits (351), Expect = 0.0
 Identities = 360/363 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccagtctcctcttgtcttcctacagaagacagtgttcttctggctaccttcagg 63
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccagtctcctgttgtcttcctacagaagacagtgttcttctggctaccttcagg 263

                                                                       
Query: 64  tcaaaatgtatagctcttggctcttccagcaccatgtctgcctgcaggctatcatgcttc 123
           |||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 264 tcaaaatgtagagctcttggctcttccagcacaatgtctgcctgcaggctatcatgcttc 323

                                                                       
Query: 124 cagccatgatgataatgactgaacctctgaaactgtaagctagccccagttaaatgtttt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cagccatgatgataatgactgaacctctgaaactgtaagctagccccagttaaatgtttt 383

                                                                       
Query: 184 cttttataagagttgccttgatcatggtatctcttcacagcaatgaaaccctaagacaga 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cttttataagagttgccttgatcatggtatctcttcacagcaatgaaaccctaagacaga 443

                                                                       
Query: 244 tccctcataggatacatatgggcctgagccctgtgtagcctgctgcaaagcctctagttg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tccctcataggatacatatgggcctgagccctgtgtagcctgctgcaaagcctctagttg 503

                                                                       
Query: 304 acagacaattgctttgttctagtcattcactcactttccgtcatttatcttaattctccc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 acagacaattgctttgttctagtcattcactcactttccgtcatttatcttaattctccc 563

              
Query: 364 caa 366
           |||
Sbjct: 564 caa 566


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 767
Length adjustment: 9
Effective length of query: 358
Effective length of database: 758
Effective search space:   271364
Effective search space used:   271364
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)