BAC Information

Click to search

BAC

Clone NameMSMg01-300O03
Chromosome18 (Build37)
Map Location 16,744,366 - 16,744,687
singlet/doubletsinglet
Overlap genenone
Upstream geneChst9, LOC670012, LOC100040551, EG225228, LOC100040202, Ppia-ps18_172.1, EG665509
Downstream geneCdh2, LOC665519, 1700001G01Rik, 4921533I20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-300O03.T7 (MSMg01no300_o03.b1)MSMg01-300O03.TJ (MSMg01no300_o03.g1)
ACCAG427243AG427244
length755732
length of high quality
(start - end)
322 (434 - 755)315 (75 - 389)
definitionCHROMAT_FILE: MSMg01no300_o03.b1 PHD_FILE: MSMg01no300_o03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:38:08 2005CHROMAT_FILE: MSMg01no300_o03.g1 PHD_FILE: MSMg01no300_o03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:38:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACTGCATTGCTTTTGTAGCACAGCAATTTTTCATATTTTTTTTAGG
ATCCGCTATATTTCAAAAGTAGATTTCTGTGATTTTTTTCTCTCCCAATT
TAGCACTTTCCTCCATCTTGATCCATAATGTTGAAAGTCAGCCTCTGAAC
AGAATGTCGAATGTAAGGTCTGATTTCCAGTCATTATTTGTTAAACATTT
CAACCTTGACCCAGTCATGTGACACGGAATCTTTACCTATACATTTCTCG
TGTATATAATGGACTTCTTGNGTCTTTTATTCTGGTTTAAGTTGGGTCAT
TGGATTTTTTCTGTTTTGGGGGNCTTAAACCGGCCCCTATTTTTAAAAAA
AACCCATTTCCCCAGTAAGGCCTCATCAATAAAGATTTTCTATTATTTAT
TTTTCTGCATTTTCCTTGTTCATGAGTTTCAGAAATATTTTGTCAAGTAC
GACAACAATTTGTATTTCATCTTTTACTGAGTTGTAGAAAATTAATAATG
TCGCTTCCCGTCCAGTTCTCCATATTTTCATACTATAGGGACTTACTAAA
CATCTAAATTGTGTGCTTTATTTTGTGCTTTTTATTATTAGGAAAGGACT
TTCCTTCACACTGCAATCTCTACTCCCCTGCTTCTCTTACGGGTCTCTCT
CAGGTTGGCTGACTTTGATCTCGCTGATTTCTGCCTTAGGTTACCTTTCT
ACAAG
ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGA
GAAGCACTTGAAAAAATGTTCACCATCCTTAATCATCAGGGAAATGCAAA
TCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATC
AAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAAC
ACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAGAT
CAGTCTGGCGGTTCCTCAGAAAACTGGACATAGTACTACCGGAGGATCCA
GCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACAGGTAAGAA
GGACACATGTCTCCACTAGGTTCATAGCAGCCTCTATTATAATAGCCAGA
AGCTGGAAAGAACCTAGAGTCCCTCAACAGAGGAAGGATACAGAANAGTG
GTACATCTAACCAGGAGTATACTCGCTATTAAAAGAAGAATTTATGAATT
CCTAGCCAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACA
TTCACAAAGAAACTCACACAATATGTATTCACTGATAAGTGGATATTAGC
CCCAAACCTAGGATACCCAAGATATAAGATATAATTTGCTAAACACATGA
AACTCAAGAAGAATGAAGACTGAAGTGTGGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no300_o03.b1 MSMg01no300_o03.b1 CHROMAT_FILE:
MSMg01no300_o03.b1 PHD_FILE: MSMg01no300_o03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:38:08 2005
         (322 letters)



>mm_chr18_16744166_16744887
          Length = 722

 Score =  615 bits (318), Expect = e-180
 Identities = 321/322 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gattttctattatttatttttctgcattttccttgttcatgagtttcagaaatattttgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 gattttctattatttatttttctgcattttccttgttcatgagtttcagaaatattttgt 463

                                                                       
Query: 61  caagtacgacaacaatttgtatttcatcttttactgagttgtagaaaattaataatgtcg 120
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 caagtacgacaacaaattgtatttcatcttttactgagttgtagaaaattaataatgtcg 403

                                                                       
Query: 121 cttcccgtccagttctccatattttcatactatagggacttactaaacatctaaattgtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 cttcccgtccagttctccatattttcatactatagggacttactaaacatctaaattgtg 343

                                                                       
Query: 181 tgctttattttgtgctttttattattaggaaaggactttccttcacactgcaatctctac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 tgctttattttgtgctttttattattaggaaaggactttccttcacactgcaatctctac 283

                                                                       
Query: 241 tcccctgcttctcttacgggtctctctcaggttggctgactttgatctcgctgatttctg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 tcccctgcttctcttacgggtctctctcaggttggctgactttgatctcgctgatttctg 223

                                 
Query: 301 ccttaggttacctttctacaag 322
           ||||||||||||||||||||||
Sbjct: 222 ccttaggttacctttctacaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)