BAC Information

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BAC

Clone NameMSMg01-301B09
Chromosome18 (Build37)
Map Location 89,133,556 - 89,134,187
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039961, LOC100039972, LOC623177, LOC665497, LOC100040003, LOC623208, Socs6
Downstream geneRttn, Cd226, Dok6, LOC383320
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-301B09.T7 (MSMg01no301_b09.b1)MSMg01-301B09.TJ (MSMg01no301_b09.g1)
ACCAG427384AG427385
length760761
length of high quality
(start - end)
349 (382 - 730)632 (70 - 701)
definitionCHROMAT_FILE: MSMg01no301_b09.b1 PHD_FILE: MSMg01no301_b09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:38:23 2005CHROMAT_FILE: MSMg01no301_b09.g1 PHD_FILE: MSMg01no301_b09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:38:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TCACCTCTGCTCTATCCCACAGGTATTATGGGTATACTTTCTTATCAGCA
TTCAGTAATTTCCATTGTGGCTTCTGCTTTAACTTTGGGGTAATTTAGAA
ATGTATTCACTTTCAAATATATTAACATACTTCATCTTTTTTTATTACTT
ATAACTGAATTACAAAATGCAAAGAATTCTTGTAATACACAAACTTGCTA
GAGACCAAGCAGACATGGGCCATAGAGAAGTCTGTTTTCCCTAAATTTTG
ATAGCAAACCTTCACCAAATTTTGTAGCTCAAGGTTATCAGTTGTGATAT
TCAGGTTTTACATATTCCTTTCTACCTACCCCCACCTTGATGTGTAAGTT
GTAAATACTTCATTCTTTCCTCAAACTTGAGAGGGTGAGATAGGAGGGCA
CCAGTTCAAGGCCATATTAAGCTATAGTGCGAGACTTACCTAAAAAAATA
AAGTAGTGATAAAATGACTCCAAACAATACTCTGCTATACTCATGGACCA
TTGCCTTATTCAGCCATCATTAAAGAAGCTTCCTCCTGCAGCCGATGGGA
ACAAAATCAGATACCCATTGCCAGACATACTGTAGGGGAAAAGACTTTGG
AACACACTGCTCTAGATGAAATGTCTCCATAAAATCCCTTTGCCCCTGAG
CTCAGAGAACCCTGTATAAAGGCAACAGAAGGAATGTATAAGCCAGGGCT
GGAGAGGTGC
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTTAATTTTACAAAATTTAAATACTGAAACT
GTTACTCATGTGAATGAAGGGTTTCTGTTGCAGGTTCCTGGTTCCTACCA
GGGAATCATGGTGAGAGGAGATTGAATATGCAGCTGGTGACATTGTGTTC
CCAGTCAGGAATAAGAGATAACTGCTTGTGCACAGCTCACACACTTCTTT
CTTATTGTCTAGGATCCCAGCCCTTGCAATGGTGCCATCCATAAGCAACA
CAAGACACAGAGCTACTGACAGGCACCCTCAGAAGCTAACCTAATACAAA
TAATTATCCACAGGAATGTCCAGAATGAACCTAATATTGATCATTTCATA
CAAGCATGTTCAGGTAATTATCTACTACGTAATTTTGGATTCTGTGAAAC
CAACTGTCTTAGTCAGGGTTTCTATTCCTGCACAAACATCATGACCAAGA
AGCAGTTTGGGAGGAAAGGGTTTATTCAGCTTACACTTCCATACTGCTAT
TCATCACCAAGGAAGTCAGGACTGGAACTCAAGCAGGTCATGAAACAGGA
GCTGATGCAGAGTCCATGGAGGGATGGTCTTTACTGGCTAGCTTCCCCTG
TCTTGCTCAGCCTGCTCTCTTATAGAACCCAGGACTACCAGCCCAGAGAT
GGCACCACCCACAAGGGGACCTCCCCCCTTGATCACTAATTGAGAAAATG
CCTTATAGCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no301_b09.g1 MSMg01no301_b09.g1 CHROMAT_FILE:
MSMg01no301_b09.g1 PHD_FILE: MSMg01no301_b09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:38:24 2005
         (632 letters)



>mm_chr18_89133356_89134387
          Length = 1032

 Score = 1176 bits (608), Expect = 0.0
 Identities = 626/632 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttaattttacaaaatttaaatactgaaactgttactcatgtgaatgaagggtttctgtt 60
           ||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct: 201 tttaattgtacaaaatttaaatactgaaactgttactcacgtgaatggagggtttctgtt 260

                                                                       
Query: 61  gcaggttcctggttcctaccagggaatcatggtgagaggagattgaatatgcagctggtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcaggttcctggttcctaccagggaatcatggtgagaggagattgaatatgcagctggtg 320

                                                                       
Query: 121 acattgtgttcccagtcaggaataagagataactgcttgtgcacagctcacacacttctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acattgtgttcccagtcaggaataagagataactgcttgtgcacagctcacacacttctt 380

                                                                       
Query: 181 tcttattgtctaggatcccagcccttgcaatggtgccatccataagcaacacaagacaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcttattgtctaggatcccagcccttgcaatggtgccatccataagcaacacaagacaca 440

                                                                       
Query: 241 gagctactgacaggcaccctcagaagctaacctaatacaaataattatccacaggaatgt 300
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gacctactgacaggcaccctcagaagctaacctaatacaaataattatccacaggaatgt 500

                                                                       
Query: 301 ccagaatgaacctaatattgatcatttcatacaagcatgttcaggtaattatctactacg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccagaatgaacctaatattgatcatttcatacaagcatgttcaggtaattatctactacg 560

                                                                       
Query: 361 taattttggattctgtgaaaccaactgtcttagtcagggtttctattcctgcacaaacat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taattttggattctgtgaaaccaactgtcttagtcagggtttctattcctgcacaaacat 620

                                                                       
Query: 421 catgaccaagaagcagtttgggaggaaagggtttattcagcttacacttccatactgcta 480
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 catgaccaagaagcagttggggaggaaagggtttattcagcttacacttccatactgcta 680

                                                                       
Query: 481 ttcatcaccaaggaagtcaggactggaactcaagcaggtcatgaaacaggagctgatgca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttcatcaccaaggaagtcaggactggaactcaagcaggtcatgaaacaggagctgatgca 740

                                                                       
Query: 541 gagtccatggagggatggtctttactggctagcttcccctgtcttgctcagcctgctctc 600
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 741 gagtccatggagggatggtctttacaggctagcttcccctgtcttgctcagcctgctctc 800

                                           
Query: 601 ttatagaacccaggactaccagcccagagatg 632
           ||||||||||||||||||||||||||||||||
Sbjct: 801 ttatagaacccaggactaccagcccagagatg 832


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1032
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1022
Effective search space:   635684
Effective search space used:   635684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)