BAC Information

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BAC

Clone NameMSMg01-303L17
Chromosome18 (Build37)
Map Location 54,345,950 - 54,346,066
singlet/doubletsinglet
Overlap genenone
Upstream geneSnx2, Gm1859, Snx24, Ppic, Prdm6, Ccdc100, Csnk1g3, EG433184, LOC667360
Downstream geneEG545257, LOC100042489, Zfp608, LOC100043089
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-303L17.T7 (MSMg01no303_l17.b1)MSMg01-303L17.TJ (MSMg01no303_l17.g1)
ACCAG429238
length721707
length of high quality
(start - end)
---120 (70 - 189)
definitionCHROMAT_FILE: MSMg01no303_l17.b1 PHD_FILE: MSMg01no303_l17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:41:43 2005CHROMAT_FILE: MSMg01no303_l17.g1 PHD_FILE: MSMg01no303_l17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:41:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXX
TCTGTGGTAGCCTGGGGACGCTGGCTTCGCATAGGGTGAACTAAGAAGTT
TCCAAAATTCAGAGCCGGACTGCGTGCGACAGGAACACTGATGCAAGAGG
AACAACCACCATTCTGTCCGGCTGCACCAATGGCTAACCCAGTATCCTAG
TGTTCTACAACATGAGATTTATTTCCCTGTCCATGCCGCACACCTCCGGT
TGAGTTGGGATCTTTTCCCATGTCATTTTGCTCTGCATTCCGTTGAAAGC
CCTGATCGAGAATACCAATTCTTTTTGACATGACAAAAAATGCCAGTTAT
TTTACAACCAGTGTTTCTGAACACTTCTGGTGAGAACTGGGTCTGTGCTC
TCCCCCCATTTCATTGCTCTGTGCAAGTCACATAACCAAACACCCCCCCC
GGGAAAGTATCTTCTCTCATTTGAAAATAGTATCAGGAAGAAATATATTC
TTATTCTCTACATTTATTACCATTCTAAATAACTTCTCCACACTCCTGAA
TTATAGCAGGGAATAATGGCCTTTACTATTCGGGCATAATTAATCTTCCC
TGTCAATTGTATTCGCATCTAAATCTCCTAGCTGTGCTTTATCTCTCACT
GTGTCTATTATGCACTCATCTGCACTGGCAAGACCCTCCACTTTGGGGGT
CTCCCCCTTTCATGTCCTATGACGTCCTCCTCTCTTCGATCATGACCGTT
CCATACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no303_l17.g1 MSMg01no303_l17.g1 CHROMAT_FILE:
MSMg01no303_l17.g1 PHD_FILE: MSMg01no303_l17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:43 2005
         (120 letters)



>mm_chr18_54345750_54346269
          Length = 520

 Score =  190 bits (98), Expect = 3e-53
 Identities = 113/118 (95%), Gaps = 2/118 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgcgtgcgacaggaacactgatgcaagaggaacaaccaccattctgtccggctgcacca 60
           |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||
Sbjct: 317 ctgcgtgcgacaggaacactgatgcaggaggaacagccaccattctgtccggctgcagca 258

                                                                     
Query: 61  atggctaacccag-tatcctagtgttctacaacatgagatttatttccctgtccatgc 117
           ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 atggctaacccagat-tcctagtgttctacaacatgagatttatttccctgtccatgc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 120
Length of database: 520
Length adjustment: 8
Effective length of query: 112
Effective length of database: 512
Effective search space:    57344
Effective search space used:    57344
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)