BAC Information

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BAC

Clone NameMSMg01-308I01
Chromosome18 (Build37)
Map Location 22,016,935 - 22,173,762
singlet/doubletdoublet
Overlap gene4921528I01Rik
Upstream geneD030074E01Rik, Rnf125, Rnf138, Mep1b, EG622978, Gm944, LOC665722, LOC225264, Klhl14
Downstream geneLOC546708, LOC100040547, Asxl3, Nol4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-308I01.T7 (MSMg01no308_i01.b1)MSMg01-308I01.TJ (MSMg01no308_i01.g1)
ACCAG432566AG432567
length711711
length of high quality
(start - end)
377 (46 - 422)343 (77 - 419)
definitionCHROMAT_FILE: MSMg01no308_i01.b1 PHD_FILE: MSMg01no308_i01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:49:50 2005CHROMAT_FILE: MSMg01no308_i01.g1 PHD_FILE: MSMg01no308_i01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:49:50 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,173,390 - 22,173,762)(22,016,935 - 22,017,277)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGGAATACCCCATTATTAATGCTCAGCAAGAACTTGAATATAA
AAAATTGATTCCTAACTGCCTTAGATATATCTATCCTGATAGTTTGCCAC
ATGTGACCCAAAGCATAGTGTTCATATGTGTGATGAGAAAATTCAGGGTT
CACTGATGACCAAATCTTCTCATTAGGGACATTTTTTATGTGGGGTCCAC
TTTAAGGTTTTAGTGGTAAACAGTGTGGTAGCACACTCTGCTTCCTCCCA
GCAAGCATGATGTCATTCCTTTTTAGAAACTGAGTAAGTTCACAAATACC
TATGTAAGGCAATCCAAGAAGAGATATGTTATATGAAAGGTATACTTGGT
GTTACTGATCCAGACATTCTCCCCGCCCAGAAGAATTGATCACAATTATA
GATCATCTTTAGATCTATAATTGTTTAGGGAGAAAACCATATAATATCTA
CTGTAGTGTTGACCAAGCAAGTAAAAGAATTAAATGTACTAGCAACTAGT
AAGAGAGTCAGACACTCTACTCCACTCTGCATTCTTGACAGCCCAGTCTT
TCCCCATGCCAAAGCTTCTCTCCTGTGTTTTTAACATTTATTTATTTATT
GTTGTCGCCTGCTTGATCGTCTTTTCCCCCACCCCCACCTCTTTTTCTTC
CTTACACTCTC
CCGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGGAAGCCAGGATTTCAACTCCCT
CCCACCCCCTGTCCTTGCAGCTATGCCCATTGCTGTGAGGTCAGCTGGGA
TGAAAAACTATCCTATATAGAAATATGGGAGGGGTATGGCCCCTAAAACA
AGCACAGATGGGCAGCCCAGCAGAGCTATGGGCTGTGTTGGACCCGGCAA
CTAGTTCTGTTAATATTATTATTTAAGTATCTTTTTTAAAAAAATTGAAT
CCTTCATTCTTTCTTTTACTGTGATGTCTACCATTATTTGAAAGGTTCCA
CGTGGACTTACTTAAGAATGAAGTTTAGAACATAAAAGTACTTATTACTT
TTATTTAATGAATACTTAGGATCCAAATACTAACCTCTAGAATAGCAATA
GGAAGTGAGAGATGTGTTAGCCCTCTGACCCATTAGCTTAGTCCAGAAAA
GTGAAGATTCAGTGATGTAATAGGAAAGGCCTGGGTATGCTTTCAAAATA
TAAGTGACTAAGAGCTTGACTTTTTGAAGTGAAGTGAAGAGGGCAATCCT
TTGTCATGACTTAAGCATGGAGAAGGTGCTCTGGGTGATTTTGATTGGTG
TGTGGGACTCAGTTCAACACTGGAAGGTAGTTTCAATTTTATCATTGCCT
TCAGCAATATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no308_i01.b1 MSMg01no308_i01.b1 CHROMAT_FILE:
MSMg01no308_i01.b1 PHD_FILE: MSMg01no308_i01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:50 2005
         (377 letters)



>mm_chr18_22173186_22173962
          Length = 777

 Score =  714 bits (369), Expect = 0.0
 Identities = 372/373 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttggaataccccattattaatgctcagcaagaacttgaatataaaaaattgat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 gaattctttggaataccccattattaatgctcagcaagaacttgaatataaaaaattgat 518

                                                                       
Query: 65  tcctaactgccttagatatatctatcctgatagtttgccacatgtgacccaaagcatagt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 tcctaactgccttagatatatctatcctgatagtttgccacatgtgacccaaagcatagt 458

                                                                       
Query: 125 gttcatatgtgtgatgagaaaattcagggttcactgatgaccaaatcttctcattaggga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 457 gttcatatgtgtgatgagaaaattcagggttcactgatgaccaaatcttctcattgggga 398

                                                                       
Query: 185 cattttttatgtggggtccactttaaggttttagtggtaaacagtgtggtagcacactct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 cattttttatgtggggtccactttaaggttttagtggtaaacagtgtggtagcacactct 338

                                                                       
Query: 245 gcttcctcccagcaagcatgatgtcattcctttttagaaactgagtaagttcacaaatac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 gcttcctcccagcaagcatgatgtcattcctttttagaaactgagtaagttcacaaatac 278

                                                                       
Query: 305 ctatgtaaggcaatccaagaagagatatgttatatgaaaggtatacttggtgttactgat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 ctatgtaaggcaatccaagaagagatatgttatatgaaaggtatacttggtgttactgat 218

                        
Query: 365 ccagacattctcc 377
           |||||||||||||
Sbjct: 217 ccagacattctcc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 377
Length of database: 777
Length adjustment: 9
Effective length of query: 368
Effective length of database: 768
Effective search space:   282624
Effective search space used:   282624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no308_i01.g1 MSMg01no308_i01.g1 CHROMAT_FILE:
MSMg01no308_i01.g1 PHD_FILE: MSMg01no308_i01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:50 2005
         (343 letters)



>mm_chr18_22016735_22017477
          Length = 743

 Score =  617 bits (319), Expect = 0.0
 Identities = 337/343 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggaagccaggatttcaactccctcccaccccctgtccttgcagctatgcccattgctgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 aggaagccaggatttcaactccctcccaccccctgtccttgcagctatggccattgctgt 260

                                                                       
Query: 61  gaggtcagctgggatgaaaaactatcctatatagaaatatgggaggggtatggcccctaa 120
           ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct: 261 gaggtcagctgggatgaaaaactatcctacatagaaacatgggaggggtatggcccctaa 320

                                                                       
Query: 121 aacaagcacagatgggcagcccagcagagctatgggctgtgttggacccggcaactagtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacaagcacagatgggcagcccagcagagctatgggctgtgttggacccggcaactagtt 380

                                                                       
Query: 181 ctgttaatattattatttaagtatcttttttaaaaaaattgaatccttcattctttcttt 240
           ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 381 ctgttaatattatcatttaagtatctttttttaaaaaattgaatccttcattctttcttt 440

                                                                       
Query: 241 tactgtgatgtctaccattatttgaaaggttccacgtggacttacttaagaatgaagttt 300
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 441 tactgtgatgtctaccattatttgaaaggttccatgtggacttacttaagaatgaagttt 500

                                                      
Query: 301 agaacataaaagtacttattacttttatttaatgaatacttag 343
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agaacataaaagtacttattacttttatttaatgaatacttag 543


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 743
Length adjustment: 9
Effective length of query: 334
Effective length of database: 734
Effective search space:   245156
Effective search space used:   245156
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)