BAC Information

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BAC

Clone NameMSMg01-308K21
Chromosome18 (Build37)
Map Location 6,384,004 - 6,384,673
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039442, Zeb1, EG664925, Arhgap12, Kif5b, LOC100039469, EG621100, LOC665028, EG622152
Downstream geneEpc1, LOC665047, 4921524L21Rik, LOC100039583, EG665053, Rab18, LOC620787, LOC100039635, Mkx, LOC664778, Armc4, Mpp7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-308K21.T7 (MSMg01no308_k21.b1)MSMg01-308K21.TJ (MSMg01no308_k21.g1)
ACCAG432688AG432689
length746745
length of high quality
(start - end)
200 (432 - 631)672 (74 - 745)
definitionCHROMAT_FILE: MSMg01no308_k21.b1 PHD_FILE: MSMg01no308_k21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:50:04 2005CHROMAT_FILE: MSMg01no308_k21.g1 PHD_FILE: MSMg01no308_k21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:50:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAAGATCCGCGGA
ATTCTCACCTGAGTTACACCGAATGGCCGAGAAGCACCTGAAAAAATGTT
CAACTTCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTC
CACTTCACTCCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAG
ATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCAGTTGTTGGTGGG
ATTGCAAGCCTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGA
AAATTGGACATAGTACTACTGGAGGATTCTCGCAATACCTCTCCTGGGCA
TATATCCAGAAGATGTCCCAATCGGTAAGAAGGACACATGCTCCACTATG
TTCATAGCAGCCTTATTTATAACCCCCCCAAGCTGGAAAGAACCCAAATG
CCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAATGG
AGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAA
TGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACCTAATCACAAAG
GAACTCACACAATATGTACTCACTGATAAATGGATATTAGCCCAGAAACT
TAGGATACCCCAGATATAAGATACTACTTGCTAAACGCATGAAATTCAAG
AAGAACGAAGACCAAAGTGTGCACTCTTTGCCCCTTCTTACAATTG
CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTCAGGAAGGCAGGTTCAGCCTCTCAG
CTGTGTCTTGTCTGCTGCAGGTGACAGAACAATAAAACCATCTAGGTCTG
AAGGTTCCACCCCAGGTGGTCTCATTCACAGTGGCAGCAAGGTCTGAATC
AGCCTGCTCAAAGCTGTGGGAGGCTACATTTATGGGTTAATGGGAACTCA
TCATGATGCTAGACATACTAGATGCAACTCTTCCAATGGAGCCATAACCA
GGCGAGCTTGCAGGGTTTAATAAGTGCTTTCAAGTGGTTTGTGCAAGGGT
CACAGCATAGTGCTAGATTGTACAGGGAGGAATTGCGGGGTTAGGTTGCC
CTCTAGTGATAACCACATACACCCCCAAAGTGTTTGTGAGTTAAGACCTT
CTCAAACTATAAAATTGTTAAAATAAGTTAATGAGAAATTTACAGAGGGG
CTGGAGCTATGGCTTGGTGGTCAAGAGCTTTCCCAGAGGACCTGGGATTT
GTTTCTCAGCACCAACCTGGTGACTCACAACAGTTTCTAACTCTAATCTT
CGGGCATCTAACACCATCTTCTGGCCTCAAAGACACATACATATATGCAG
GAAAAACATTCATACAAATAANATTTTAAAAAGTACATTTACAGAAAAAA
ATAGTAATTTCTTTGTTATTTGTATCATTTAAATGTCTTTCATTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no308_k21.g1 MSMg01no308_k21.g1 CHROMAT_FILE:
MSMg01no308_k21.g1 PHD_FILE: MSMg01no308_k21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:50:04 2005
         (672 letters)



>mm_chr18_6383804_6384875
          Length = 1072

 Score = 1183 bits (612), Expect = 0.0
 Identities = 656/671 (97%), Gaps = 1/671 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcaggaaggcaggttcagcctctcagctgtgtcttgtctgctgcaggtgacagaacaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcaggaaggcaggttcagcctctcagctgtgtcttgtctgctgcaggtgacagaacaat 260

                                                                       
Query: 61  aaaaccatctaggtctgaaggttccaccccaggtggtctcattcacagtggcagcaaggt 120
           ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 261 aaaaccatctaggtctgaaggttccaccctaggtgatctcattcacagtggcagcaaggt 320

                                                                       
Query: 121 ctgaatcagcctgctcaaagctgtgggaggctacatttatgggttaatgggaactcatca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgaatcagcctgctcaaagctgtgggaggctacatttatgggttaatgggaactcatca 380

                                                                       
Query: 181 tgatgctagacatactagatgcaactcttccaatggagccataaccaggcgagcttgcag 240
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 381 tgatgctagacatactagatgcaactctttcaatggagccataaccaggcgagcttgcag 440

                                                                       
Query: 241 ggtttaataagtgctttcaagtggtttgtgcaagggtcacagcatagtgctagattgtac 300
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggtttagtaagtgctttcaagtggtttgtgcaagggtcacagcatagtgctagattgtac 500

                                                                       
Query: 301 agggaggaattgcggggttaggttgccctctagtgataaccacatacacccccaaagtgt 360
           |||||||||||||||||||||||||||||||||||||||||||||| |  ||||||||||
Sbjct: 501 agggaggaattgcggggttaggttgccctctagtgataaccacatagaaacccaaagtgt 560

                                                                       
Query: 361 ttgtgagttaagaccttctcaaactataaaattgttaaaataagttaatgagaaatttac 420
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 561 ttgtgagttaagaccttctcaaactttaaaattgttaaaataagttaatgagaaatttac 620

                                                                       
Query: 421 agaggggctggagctatggcttggtggtcaagagctttcccagaggacctgggatttgtt 480
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agagtggctggagctatggcttggtggtcaagagctttcccagaggacctgggatttgtt 680

                                                                       
Query: 481 tctcagcaccaacctggtgactcacaacagtttctaactctaatcttcgggcatctaaca 540
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tcccagcaccaacctggtgactcacaacagtttctaactctaatcttcgggcatctaaca 740

                                                                       
Query: 541 ccatcttctggcctcaaagacacatacatatatgcaggaaaaacattcatacaaataana 600
           |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
Sbjct: 741 ccatcttctggccttaaagacacatacatatatgcaggaaaaacattcatacacataaaa 800

                                                                       
Query: 601 ttttaaaaagtacatttacagaaaaaaatagtaatttctttgttatttgtatcatttaaa 660
           ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tta-aaaaagtacatttacagaaaaaaatagtaatttctttgttatttgtatcatttaaa 859

                      
Query: 661 tgtctttcatt 671
           |||||||||||
Sbjct: 860 tgtctttcatt 870


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1072
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1062
Effective search space:   703044
Effective search space used:   703044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)