Query= MSMg01no309_h13.b1 MSMg01no309_h13.b1 CHROMAT_FILE:
MSMg01no309_h13.b1 PHD_FILE: MSMg01no309_h13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:51:04 2005
(274 letters)
>mm_chr18_75581979_75582652
Length = 674
Score = 441 bits (228), Expect = e-128
Identities = 265/290 (91%), Gaps = 21/290 (7%)
Strand = Plus / Plus
Query: 5 gaattctcttcctctcacaagattgtctctcacagacagaactgtctgtcacaggcagaa 64
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 186 gaattctcttcctctcacaagattgtctctcacagacagaactgtctctcacaggcagaa 245
Query: 65 ttgtctctctcacacatg--------------------gaattctctcacacaagagaat 104
|||||||||||||||| | ||||||||||||| ||||||||
Sbjct: 246 ttgtctctctcacaca-gaaaattctctctcacacacagaattctctcacataagagaat 304
Query: 105 tctctccctcacagacttttttctaacagaattccttctcacacacagaattccttctca 164
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 305 tctctccctcacagacttttttctaacagaactccttctcacacacagaattccttctca 364
Query: 165 caaacaaaaggggtgtctagagaaagtcagccagagcaaggctttaaggagcagtaccca 224
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 365 caaacaaaaggggtgtctagagaaagccagccagagcaaggctttaaggagcagtaccca 424
Query: 225 ggcacacggccacgtagtcccagaggacatacatgaagctcctgctctta 274
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 ggcacacggccacgtagtcccagaggacatacatgaagctcctgctctta 474
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 674
Length adjustment: 9
Effective length of query: 265
Effective length of database: 665
Effective search space: 176225
Effective search space used: 176225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no309_h13.g1 MSMg01no309_h13.g1 CHROMAT_FILE:
MSMg01no309_h13.g1 PHD_FILE: MSMg01no309_h13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:51:04 2005
(286 letters)
>mm_chr18_75754067_75754752
Length = 686
Score = 522 bits (270), Expect = e-153
Identities = 282/286 (98%)
Strand = Plus / Minus
Query: 1 cagaaggttctatcaggcatgagaggatgatcacaaagccagcatggtctagagagcttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 cagaaggttctatcaggcatgagaggatgatcacaaagccagcatggtctagagagcttt 427
Query: 61 tgtgagaagtagagtcacaggcctaagggaggccaggctacacactacctgcttcagggc 120
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 426 tgtgagaagtagagtcacaggcctaagggaggccaggctaaacactacctgcttcagggc 367
Query: 121 taatgttatgacaagaacacctgccctcccctgtgctgccctgctggagggtgggtgggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 taatgttatgacaagaacacctgccctcccctgtgctgccctgctggagggtgggtgggg 307
Query: 181 cttggtaagaggtggccagcagaggtgccaagcactcattgctgggaacagactatgagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 cttggtaagaggtggccagcagaggtgccaagcactcattgctgggaacagactatgagt 247
Query: 241 tggcccattatgccttacctatggggcacagaggcagtgcgtcttc 286
||||||| || ||||||||||||||||||||||||||||| |||||
Sbjct: 246 tggcccactaggccttacctatggggcacagaggcagtgcatcttc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space: 187529
Effective search space used: 187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
