BAC Information

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BAC

Clone NameMSMg01-311C15
Chromosome18 (Build37)
Map Location 50,201,896 - 50,202,125
singlet/doubletsinglet
Overlap genenone
Upstream geneDtwd2, Dmxl1
Downstream geneTnfaip8, Hsd17b4, LOC626721, LOC667233, Gm93, Hdhd1a, LOC100042373, LOC100042385
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-311C15.T7 (MSMg01no311_c15.b1)MSMg01-311C15.TJ (MSMg01no311_c15.g1)
ACCAG433743AG433744
length730724
length of high quality
(start - end)
319 (46 - 364)237 (126 - 362)
definitionCHROMAT_FILE: MSMg01no311_c15.b1 PHD_FILE: MSMg01no311_c15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:51:56 2005CHROMAT_FILE: MSMg01no311_c15.g1 PHD_FILE: MSMg01no311_c15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:51:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTGAATCAATTTTTCTAGATCTGTGAAGATGTCGTTTTTACTGGA
GTGGGAATATATTGAGGCTTTGAATTGCTGTGAGTATATGGACATTAATC
TTCTTCCAATCCATAAACTGAGAAGACCATTCCATCTTTATATTGTCTTC
ACCTTCTCTCTTCGGTGCATTATAATTTGCATGGTACATGTCTTTCATTT
AGTAACTTAAAGCTGTTTCTTGGGATCCTTCAGTAGCTATTTAAATAGGA
ATGCTTTTATGATCTCTTTTATGATTTTCTTTCAGAAAATTCCCGAGTGT
GTAAAGAAAAGCTATTTTTTTGTGCCGCCGCCCTCGTTTCATGTAACTTT
ACTAAATTCATTCATTCCCCCCCCCTGTTATAAAAAAAAGTTTTAGTAAG
GACAGATGGTAATTTGAGTTCTTTTCATCTTATTTGCATGTCTTTCATTT
CTTTCTCTTAGGAAATTGCTCTGACTCAAACCTCTACTACAATCCTGACT
AAAAATAATGAGAGCAAACACTGCTCTACTGTTCTGGCTCTCAAACTAAA
TCCTTCCGCTTTCTTTCCAGTCATTATAGTGCTTTACCCAACGACCTACC
TATAATAGCTTTTGTTCTTTTTCACTACAAGCAATTTTCCATAAACCACT
TTCGTTTAACTAATCCCACTCTCCCATTTA
ACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCATCTGGGATTTATTAGTGTGTGCG
TGTTGGTGGCATAGCCGGATGTTCGTTCTTAACTTAAGGAAACAAAGTTT
TCAACGTGACGATGGCGACTTTTTGCTCTGTCAAGTGGTAGCAGCTGCCG
ATACCTTCCTGGTTCTGGAAACTCCATCAGCTGAAGTGGAGTGTTGCTCA
ATCTGTCGTACTAAAGGGTCTGGATGCCAATGGTAGTGGGCTGTGTAGTT
GATGAGGGAGCTAGTTAGGTGCCTCCTTATGGGGAAGCACAGCCCGTTTG
TTGACGAGAACATCTTCTTTTAACGCCCACGCACCCCCACACTCTGTTTA
TGGGGATGATAAAGCTTCCACCCCCACACAAAACACGCTGTATAACAGAG
GGCTTGCAGCTGGCAGAGTTGCGTTCCTCTTGGCTCCTTTTCTGAAGGAA
TTTTTGGAAACTTGTTAGATTTATGAATAGTTGCAGATTACCAGCCTTGT
TCTCCAGTGCAAGCGAACGCTCCTTTAAACTTTGTTTTTTTCTTTGAAGA
TAGCACATTTGGTCTTCTTTTTTTTTGATGTTTCTTTACATTATCTTCAT
GCCCCTCTTATATTACTGCTCACCCCTCCCTTTTTTATACACCCTATGCC
TACTTCTAATGATTAATATCCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no311_c15.g1 MSMg01no311_c15.g1 CHROMAT_FILE:
MSMg01no311_c15.g1 PHD_FILE: MSMg01no311_c15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:51:56 2005
         (237 letters)



>mm_chr18_50201696_50202332
          Length = 637

 Score =  445 bits (230), Expect = e-129
 Identities = 230/230 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcttaacttaaggaaacaaagttttcaacgtgacgatggcgactttttgctctgtcaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcttaacttaaggaaacaaagttttcaacgtgacgatggcgactttttgctctgtcaag 260

                                                                       
Query: 61  tggtagcagctgccgataccttcctggttctggaaactccatcagctgaagtggagtgtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggtagcagctgccgataccttcctggttctggaaactccatcagctgaagtggagtgtt 320

                                                                       
Query: 121 gctcaatctgtcgtactaaagggtctggatgccaatggtagtgggctgtgtagttgatga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctcaatctgtcgtactaaagggtctggatgccaatggtagtgggctgtgtagttgatga 380

                                                             
Query: 181 gggagctagttaggtgcctccttatggggaagcacagcccgtttgttgac 230
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggagctagttaggtgcctccttatggggaagcacagcccgtttgttgac 430


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 637
Length adjustment: 9
Effective length of query: 228
Effective length of database: 628
Effective search space:   143184
Effective search space used:   143184
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)