BAC Information

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BAC

Clone NameMSMg01-311L22
Chromosome18 (Build37)
Map Location 10,446,629 - 10,446,923
singlet/doubletsinglet
Overlap geneAK220484
Upstream geneCcny, LOC665176, LOC665184, EG639618, LOC100039755, Cetn1, LOC225155, Colec12, LOC665111, LOC100039787, EG433161, Thoc1, Usp14, Rock1, LOC100039978, LOC635344, LOC435554
Downstream geneLOC621832, Esco1, Snrpd1, LOC100039880, Abhd3, Mib1, LOC665296, 1010001N08Rik, Gata6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-311L22.T7 (MSMg01no311_l22.b1)MSMg01-311L22.TJ (MSMg01no311_l22.g1)
ACCAG434159AG434160
length742735
length of high quality
(start - end)
319 (46 - 364)295 (77 - 371)
definitionCHROMAT_FILE: MSMg01no311_l22.b1 PHD_FILE: MSMg01no311_l22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:52:41 2005CHROMAT_FILE: MSMg01no311_l22.g1 PHD_FILE: MSMg01no311_l22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:52:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCAGATCAGTCTGCTTCTTCCAAGTGCTAGGATTAAAGGCATATG
CAGGCATGTCTGGCCATACTTTTTTTTTTTAATTATTTTCTTAAAGATTT
ATTTATTACATGTGAGTACACTGTAGCTGTCTTCAGACACACCAGAAGAG
GGCATCAGATCTCGTTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGG
ATTTGAACTCTGGACCTTCAGAAGAGCAGTCAGGTGCTCTTACCCACTGA
GCCATCTCACCAGCCCCCTGGCCATACTTTTTGATGACATATCTGAAAAT
ATCTTTGTTTTAGACTCTTAGTTTTCTCCTTGCANAAACCACTATACTTA
GAGCATGATTTTCTTTCAGCACCCCCCCCCCAAAAAAAAAAAAATTGCTT
GGGGGGGTGGCGTCTAAACAGCTAATTGCAATTCTGATTATTTTTGTTGT
TGTTTAATATTTCAAGATGGGGGTCTTATCATATAGCTCTGGTTGTTCTG
CACTTCTCTTTGCATACCAGGCTCCCTTGAACTCATAGACCCTTCTGTCT
CAGTATCTTGAGTGCTTGAATTTAACGGCCACCTCATCTTGCCCTGCTTT
CCAAGGGGGGCTCCTTAACATGGTTCCCTGCCCTATATTTTTCTTTTTTT
GCCTCTACCGCCATTTTTCATCTTTGTCCTATCCTGTCCTCT
TCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGGATCTTTAGATGTACCATACAT
GTTTGTAGTATTTGTCCTTTTTTTGAGAACAACATTTATTTCTCTACAAT
AAAGGCTTACAACTGTGTCTCTTGATATTTGTTATAAAAATGGATCACTA
ATCTCCATAATTGACATTGATCCCAGTGTTTAATTGAACCTCTAAGTTCA
ATTAAAATTCCTTCAGAATTTCCCCATCCTGGTATTTAAATTTCAGAGGT
GTACTTCTTCCCATTGCATTTGAAATAATGACAAACCTCCAGACTCTAGA
TGGACAGAATCTCCTGTATGNATAGTTTCCCTCCCCCCCCCTTGTTGCTG
GGAGATGTTCACATGACCTCTCCCCCCCCAGCAAAAAAAAAAAAAAATGC
TCTCCTGGTCACTATCTTTTTAAACCCAAGTTGGAGGTTGTTTGATTAAT
GAATGGTGAGCTTTTCTATTCGGAGCTATGCATATTGTTGACATTGTGTC
ACATGTTGCTTTTTTAATTTCTGATGTGCTTAATGTGTTTTTAATTTGCA
AAGCATGAGTGTTCCTTTCATAGCAGTAGAATAGAGTCGGTGTTTCTAAG
TCCAGATATTGCTTTATGTATACAAGAAGAGTCAGACTGAATTGAAGCCC
TGGGTTTCCTTCAACACACATGTCCATGAATTTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no311_l22.g1 MSMg01no311_l22.g1 CHROMAT_FILE:
MSMg01no311_l22.g1 PHD_FILE: MSMg01no311_l22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:52:41 2005
         (295 letters)



>mm_chr18_10446429_10447124
          Length = 696

 Score =  540 bits (279), Expect = e-158
 Identities = 291/295 (98%), Gaps = 1/295 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggatctttagatgtaccatacatgtttgtagtatttgtccttttttt-gagaacaacat 59
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 tggatctttagatgtaccatacatgtttgtagtatttgtccttttttttgagaacaacat 260

                                                                       
Query: 60  ttatttctctacaataaaggcttacaactgtgtctcttgatatttgttataaaaatggat 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttatttctctacaataaaggcttacaactgtgtctcttgatatttgttataaaaatggat 320

                                                                       
Query: 120 cactaatctccataattgacattgatcccagtgtttaattgaacctctaagttcaattaa 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cactaatctccataattgacattgatcccagtgtttaattgaacctctaagttcaattaa 380

                                                                       
Query: 180 aattccttcagaatttccccatcctggtatttaaatttcagaggtgtacttcttcccatt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aattccttcagaatttccccatcctggtatttaaatttcagaggtgtacttcttcccatt 440

                                                                  
Query: 240 gcatttgaaataatgacaaacctccagactctagatggacagaatctcctgtatg 294
             ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttatttgaaataaggacaaacctccagactctagatggacagaatctcctgtatg 495


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 696
Length adjustment: 9
Effective length of query: 286
Effective length of database: 687
Effective search space:   196482
Effective search space used:   196482
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)