BAC Information

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BAC

Clone NameMSMg01-312H01
Chromosome18 (Build37)
Map Location 32,110,310 - 32,110,541
singlet/doubletsinglet
Overlap geneLims2
Upstream geneRit2, EG666130, Syt4, LOC383420, Slc25a46, Sap130, LOC640549, Ammecr1l, Polr2d, EG626327, Wdr33, Sft2d3, Gpr17
Downstream geneMyo7b, Iws1, Proc, LOC546710, Map3k2, Ercc3, Bin1, Gypc, LOC100041160, LOC100041170, Tslp, Wdr36, Camk4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-312H01.T7 (MSMg01no312_h01.b1)MSMg01-312H01.TJ (MSMg01no312_h01.g1)
ACCAG434658AG434659
length730748
length of high quality
(start - end)
232 (130 - 361)---
definitionCHROMAT_FILE: MSMg01no312_h01.b1 PHD_FILE: MSMg01no312_h01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:31 2005CHROMAT_FILE: MSMg01no312_h01.g1 PHD_FILE: MSMg01no312_h01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCCTGTCGTAAATGCATCAGGCAAACAGAACAGAACAAATACACACAG
CCTGGTATCTGTGGTGTTATGCCCTGGAATTTAGAGCCAGGCTTTGCCAC
TTGGCTAGAGTTTGCCTCAAGGGAGGAAGGGAGAGTGACTTCACTTCTCT
TATCTTTGGCTTCTTCAACTGTCAAATGCAGTGAAATTCCCAGCTGCACA
ATGCTATGGGAAAAGGCAAACTGACCATACCATTGGGCAGTCCGTCCTCT
CCAGATGTTAACCACACATAATTGCTTATGTGTTATATTATGTTTCGGGG
GCAGGGTCTCATTAATTCTTCCTGCCCCCCCCCCCCTCACTATGTAGCCC
AAGATGACCTTGAACCTCCCCCCTTACAGAAAAAGATACCCAAGTGCAGA
GAATCTGTTTATGATTACCACACAGCTTATGCAGCTTTGAGGATGTAATC
CAGGGCTTTGCTATTGGGCTACTCACATCCTACTACTGTTGAGTTACAAC
CCCTCCTGTTACTTCAACATTTTTCAATTGTTAATTTTAAGTCTTTGGAA
ATTAACAATGCTGGTTTGATTGCCCTGAATGGCTTGTTCACGAGTGCAAC
CCGTTTGTGACGAATTTCTATGAGTTCCGTTCACCCCCCTTCCATTCCCA
GGCTGTACCTCTTTATCTTTGGATTAGTAT
CTTCTGAAAATACTGNCGAAAGANNGNNCTTCGNGACCNAGGGGGNNNAG
AGAAGNGTTCCAANGAGGAGGGGGGNNGGAGGGGGGGNGNNNNGNNNNNN
NAGGGNNNNGNNTTTCGTCCAAAAAAAAAGAGGGGGNNNNNNNGNGNNNN
NNGGNNGGGGGGGGGGGGGGGGGGGAGGGGGGGGGGGNGGGGGGGGGGGN
GGNNNGGNNNGGGGAAGGGGAAAAAAAAGGGAGAGAGGAGAATTTTTAAG
GAGGGAAAGAAAAAGGAGAGGAGAGAGAGGGAGGGAAAAAAAGAAAAGGA
GAAAAATTTTTATATTTTTAAAAAGAAAAAAAAGGAAGAGAGAAAAAATT
TTTTTTGTTTTTTCCCCCCCCCCCCCCCCGAAAAGAAGAAAGGAAGAGGG
GGGGNNGGGGCCCGGAAAAAAGGGAGNAAAAAAAGGGGGGGGGGGGGGGG
GGGGNGNNGANAAAAAGGCGCAACGCCCCAAGAACGAAGAGGACACACCC
ACCCACCGCCGCCCCCCCCCAACCCCCCGCACCCACAAAAAAAAAGCAAA
GAGCCGAAACCACACCAGAACCCCCCCGCCGCAAGAACCCCGAAAAACAA
ACACCCAAAACGAAAAACAAAAAAGCACCGAAAGAGGACGCAAAAGACGA
AACCACAAAAGCCCCGGACTTTTTTTTTTTTTCTTCCGGGTTGCTGTGTT
TTTTTTCGCAGTTCTTCCTCCCTTATTTTTGCTGTCGCCCTCTACGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no312_h01.b1 MSMg01no312_h01.b1 CHROMAT_FILE:
MSMg01no312_h01.b1 PHD_FILE: MSMg01no312_h01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:53:31 2005
         (232 letters)



>mm_chr18_32110011_32110642
          Length = 632

 Score =  402 bits (208), Expect = e-117
 Identities = 226/232 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttagagccaggctttgccacttggctagagtttgcctcaagggaggaagggagagtgac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 tttagagccaggctttgccacttggctagagtttgcctcaagggaggaagggagagtgac 472

                                                                       
Query: 61  ttcacttctcttatctttggcttcttcaactgtcaaatgcagtgaaattcccagctgcac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 ttcacttctcttatctttggcttcttcaactgtcaaatgcagtgaaattcccagctgcac 412

                                                                       
Query: 121 aatgctatgggaaaaggcaaactgaccataccattgggcagtccgtcctctccagatgtt 180
           |||||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct: 411 aatgctatggaaaaaggcaaactgacaataccattggtcagtccgtcctctccagatgtt 352

                                                               
Query: 181 aaccacacataattgcttatgtgttatattatgtttcgggggcagggtctca 232
           ||||||||||||||||  |||||||||||||||||||||||| |||||||||
Sbjct: 351 aaccacacataattgcaaatgtgttatattatgtttcgggggtagggtctca 300


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 632
Length adjustment: 9
Effective length of query: 223
Effective length of database: 623
Effective search space:   138929
Effective search space used:   138929
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)