BAC Information

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BAC

Clone NameMSMg01-313G05
Chromosome18 (Build37)
Map Location 26,281,846 - 26,455,539
singlet/doubletdoublet
Overlap genenone
Upstream geneFhod3, 5730494M16Rik, AW554918, Brunol4, LOC100041241, LOC665916, LOC100041263, LOC100041274
Downstream geneEG665977
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-313G05.T7 (MSMg01no313_g05.b1)MSMg01-313G05.TJ (MSMg01no313_g05.g1)
ACCAG435331AG435332
length1,2721,244
length of high quality
(start - end)
411 (44 - 454)209 (189 - 397)
definitionCHROMAT_FILE: MSMg01no313_g05.b1 PHD_FILE: MSMg01no313_g05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:55:01 2005CHROMAT_FILE: MSMg01no313_g05.g1 PHD_FILE: MSMg01no313_g05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:55:01 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,455,195 - 26,455,539)(26,281,846 - 26,282,054)
sequence
NNGGCCGCACTGGGCGCTATAXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAGAGCATAATCAGGTCCAAAAGGTAGCAGTCTCTTGTTAGAACATGT
ATCTATGTTGGAAGAATTGGGACAGACATTGCTTCTCTTTGCTTTCTGTC
CTATCAGACAATATAATGTGAGCTCTTGTTTTATGTTTTAGTTTGACAAG
AGCTCTCACTCAATTTCCCAGTGTGGTCTTCAACTCATCCAACAGCCCAT
TAATTTGCAATCCTCCTGACTCAGTCTTTCAGTAGCTGTGAGTCTAGGCC
TGTATCACCAGCCTCAGTGATATAAATGGTAATTACACAACCACTCATTC
TACTTGTTACTATAGATTAAAACTAAGAAGGTCAAAGACAAAAGCAAATA
TTCTTATGATTTCAGCAAGGAAGATTGCATGGCTGTAAGGAATCGTGAGG
ATTTTTTTTTACCCCCCCCCGCANTGGGNCGCTGACAAAAAAAAAAAGAG
GGGGGGNNNGTTCTTTGNCCCNCNNTCNAACGTCNTGGAGAACATCTCAT
TCCATTTGATACAGGAACAGAAAAGATTTTAGTTTAGAAATTTTGAACTC
AAAACTGTGAGAAGCACAAGGAGACATACCTTTCTGAAATGGATAGTAAA
GCCTGAACTAGTAATGGAGATAGTGATTCAGATTTGGCTAGCGCCCACCT
TTGCTTCTATGAAAACGAGTTACTACATCCCAGACGAGCATGATTGTCCT
AAGGCTACGCAGTCTTAGAGTACTTGTTCTCTTTTGCAATTGTAAATTTC
TGAATATTGATACTTTAATAATCTGTTACTTTCTTTTACCTCCTCTTCTT
TATCTCTCCTTTTTTATACATTCACTTCCCGTTATTTTCATCCACTTTTC
TCCTTTATTCTAAAACATACATTTCCTCTTTATAACTTTTTTATCCTCCT
CTCTCTTATTCTTCTCTTTCTCATATTTCAATTTCTTCTTAATCTTTTCT
ATCTTTTTCTTCTTTCTTTCCTTTACTCTCACTATTTTTTACTTAATTTA
CTTCCAAATATTCTTTTCTCTCTACATTTCTTTTCCTATTTTCCTTATAC
ATACTCTCTCCTACTATTTTTCTACTCCTCTTTGTTCTTCTACTCTATTT
CTCCTTCTTTTTACATACCACACTTCTTCCTTTTCTTTTTTTCTCCTTTT
TCACCCATTTCTCTTTATATCCCTCATTCTCATTCTCTTTATATCCCACT
TTACTCTTTCCTCCTTTTATTG
NNNCCTCTGACGGNAGCCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCAGAGTCCCCTGTGATTCATATTTTCTTTT
CACATCTTTATCTCAATGTTAACCCCCTTTCCTGAGACATTAGAGCACAT
GCTCTAATTGTTCCTTGTTTATTACCAGGATGGCCAAGCATTCAAGCGTC
CGAAATTAGTAGGACTTTACAAGGTAGAAGCTGAAGAGAAAGAATTCCAA
GGACAAAGGAGGGAATGGAGAGATACACAGAGAAGATAACAGATTCCATG
ACAGTGGGTCCTCTGACTACTACAAGGTTAAATATTCTAGATTTTACTGC
TCTGTACAGTTGAGAGGTAGAATTTCTTTGAGTATTTAACTATAGATATT
TTTCATTATTGGGGAAACTGGAAAATTCACCTCTTAACTAAACCACCCAT
TTTTTTTTCTCCCCCCCCCCNNNANANNNATGCTCTCAAAAAAAAAGGGG
GGGGGGNCNNNNNCNNCNNNNNNNNNNCCCGCCCNCNCCCNCCCCCTGGG
GCCNNCTGGCTCTTCTGTGCGTCTTGGCCCTTCTTCTCCTCCCGGTCTCT
CNTTTTTCCCTGGGGCTTTGTGCTTCCCTGTGTTCCTTTTTGCTTTCTCT
TCTCTTCTCGTTGTTGTTCGTCTCTCTCCTTTTTCTTCCTCGGCTNTTCT
TCCTGCTGGCCTGTCCCTGTCTGTCCGTCCTCTTGCTTTTGTCTTGTCTT
TCTTGGTCTGCTTTTCTTGCTCTCTGCCTCTCTTCTTTTTGTCCGCCCTT
CCTTTTTTCTGTTTTTGTTTCCGGCTTGCCTTTCGCCTCGTTTCGTTTGT
TCTTGTTTCCCTTCTCTCGTCTTGTCTGTTCGCTCTTCTTTCTTTTCTGT
TTGTCTTTCTTGTCGCCTCTCTCTCGTTTCCCTTCTTTTTTTTTTTTTTT
TCTTCTCTCTTTTTTCCTTCTGCTTTTTTTTCTTCTTTTTCTTTTGTTCT
TTTCCTTTCTTTTTTTTTCTTTTTCTTCCTTCTCTTTCTCTCCTTCGTCC
TCCCCCTTTCCTTCTTCTTTCTTTCCCTCCTTTCTCTCTTTTTTTTTTTC
CTTTTTTCCCTCTTTCTTTTCTCTCTTCTCTTTCTCCCCCCTCCTGTCTT
TTTCTTCTTTTTTCTTCTTTTCTTCTTCCTTCCCTTCCTTCTCCTTTTCT
CTTCTTTTTCTCCTTTTCCCCCCCTTCTTTTTCCTTTTTTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no313_g05.b1 MSMg01no313_g05.b1 CHROMAT_FILE:
MSMg01no313_g05.b1 PHD_FILE: MSMg01no313_g05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:55:01 2005
         (411 letters)



>mm_chr18_26454729_26455539
          Length = 811

 Score =  629 bits (325), Expect = 0.0
 Identities = 340/345 (98%)
 Strand = Plus / Minus

                                                                       
Query: 65  ttggaagaattgggacagacattgcttctctttgctttctgtcctatcagacaatataat 124
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 ttggaagaattgggacagagattgcttctctttgctttctgtcctatcagacaatataat 752

                                                                       
Query: 125 gtgagctcttgttttatgttttagtttgacaagagctctcactcaatttcccagtgtggt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 gtgagctcttgttttatgttttagtttgacaagagctctcactcaatttcccagtgtggt 692

                                                                       
Query: 185 cttcaactcatccaacagcccattaatttgcaatcctcctgactcagtctttcagtagct 244
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 691 cttcaactcatccaacagcccattaatttgtaatcctcctgactcagtctttcagtagct 632

                                                                       
Query: 245 gtgagtctaggcctgtatcaccagcctcagtgatataaatggtaattacacaaccactca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 gtgagtctaggcctgtatcaccagcctcagtgatataaatggtaattacacaaccactca 572

                                                                       
Query: 305 ttctacttgttactatagattaaaactaagaaggtcaaagacaaaagcaaatattcttat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||
Sbjct: 571 ttctacttgttactatagattaaaactaagaaggtcaaagacaaaagcaaatattcaaat 512

                                                        
Query: 365 gatttcagcaaggaagattgcatggctgtaaggaatcgtgaggat 409
           ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 511 gatttcagcaaggaagattgcatggctgtaaggaatcatgaggat 467


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 811
Length adjustment: 9
Effective length of query: 402
Effective length of database: 802
Effective search space:   322404
Effective search space used:   322404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no313_g05.g1 MSMg01no313_g05.g1 CHROMAT_FILE:
MSMg01no313_g05.g1 PHD_FILE: MSMg01no313_g05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:55:01 2005
         (209 letters)



>mm_chr18_26281646_26282254
          Length = 609

 Score =  397 bits (205), Expect = e-115
 Identities = 208/209 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cattcaagcgtccgaaattagtaggactttacaaggtagaagctgaagagaaagaattcc 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cattcaagtgtccgaaattagtaggactttacaaggtagaagctgaagagaaagaattcc 260

                                                                       
Query: 61  aaggacaaaggagggaatggagagatacacagagaagataacagattccatgacagtggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaggacaaaggagggaatggagagatacacagagaagataacagattccatgacagtggg 320

                                                                       
Query: 121 tcctctgactactacaaggttaaatattctagattttactgctctgtacagttgagaggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcctctgactactacaaggttaaatattctagattttactgctctgtacagttgagaggt 380

                                        
Query: 181 agaatttctttgagtatttaactatagat 209
           |||||||||||||||||||||||||||||
Sbjct: 381 agaatttctttgagtatttaactatagat 409


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 209
Length of database: 609
Length adjustment: 9
Effective length of query: 200
Effective length of database: 600
Effective search space:   120000
Effective search space used:   120000
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)