This page provides previous versions of nucleotide polymorphisms of MSM/Ms and JF1/Ms strains, corresponding to GRCm38 coordinate by Liftover from GRCm37.
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RIKEN MSM/Ms Mouse BAC clones & Library
BAC clone ordering.
BAC Information
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Search Result
BAC
Clone Name
MSMg01-315E19
Chromosome
18 (Build37)
Map Location
30,607,338 - 30,607,988
singlet/doublet
singlet
Overlap gene
none
Upstream gene
LOC666073
,
Pik3c3
,
LOC666094
,
LOC666100
Downstream gene
EG666111
,
EG666114
,
LOC433168
,
Rit2
,
EG666130
,
Syt4
Link
Open Mouse BAC browser
Click to get alignment info.
name
LOC666073
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:666073
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins
pseudo
: _no_value
name
Pik3c3
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:225326
MGI:2445019
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
LOC666094
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:666094
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 39 ESTs, 2 Proteins
pseudo
: _no_value
name
LOC666100
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:666100
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein
pseudo
: _no_value
name
EG666111
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:666111
MGI:3646368
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 243 ESTs, 1 Protein
name
EG666114
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:666114
MGI:3646364
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 74 ESTs, 4 Proteins
name
LOC433168
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:433168
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 9 mRNAs, 987 ESTs, 9 Proteins
pseudo
: _no_value
name
Rit2
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:19762
MGI:108054
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
EG666130
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:666130
MGI:3646600
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein
pseudo
: _no_value
name
Syt4
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:20983
MGI:101759
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Pik3c3
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:141803246
GeneID:225326
MGI:2445019
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: phosphoinositide-3-kinase, class 3
transcript_id
: NM_181414.4
name
EG666111
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:149269687
GeneID:666111
MGI:3646368
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 243 ESTs, 1 Protein
product
: predicted gene, EG666111
transcript_id
: XM_981660.2
name
EG666114
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:94404349
GeneID:666114
MGI:3646364
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 74 ESTs, 4 Proteins
product
: predicted gene, EG666114
transcript_id
: XM_981691.1
name
Rit2
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:31982829
GeneID:19762
MGI:108054
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: Ras-like without CAAX 2
transcript_id
: NM_009065.2
name
Syt4
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:60218903
GeneID:20983
MGI:101759
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: synaptotagmin IV
transcript_id
: NM_009308.3
name
Pik3c3
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:42475974
GeneID:225326
MGI:2445019
definition
GO_component
: GO:0005942 - phosphoinositide 3-kinase complex [Evidence IEA]
GO_function
: GO:0005524 - ATP binding [Evidence IEA]; GO:0004428 - inositol or phosphatidylinositol kinase activity [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0030145 - manganese ion binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0016303 - phosphatidylinositol 3-kinase activity [Evidence IEA]; GO:0016773 - phosphotransferase activity, alcohol group as acceptor [Evidence IEA]; GO:0004672 - protein kinase activity [Evidence IMP]; GO:0016740 - transferase activity [Evidence IEA]
GO_process
: GO:0006468 - protein amino acid phosphorylation [Evidence IMP]
codon_start
: 1
product
: phosphoinositide-3-kinase, class 3
protein_id
: NP_852079.2
name
EG666111
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:149269688
GeneID:666111
MGI:3646368
definition
codon_start
: 1
product
: similar to ribosomal protein
protein_id
: XP_986754.2
name
EG666114
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:94404350
GeneID:666114
MGI:3646364
definition
codon_start
: 1
product
: hypothetical protein
protein_id
: XP_986785.1
name
Rit2
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:6677747
CCDS:CCDS29108.1
GeneID:19762
MGI:108054
definition
GO_component
: GO:0005622 - intracellular [Evidence IEA]
GO_function
: GO:0005516 - calmodulin binding [Evidence IEA]; GO:0005525 - GTP binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
GO_process
: GO:0007264 - small GTPase mediated signal transduction [Evidence IEA]
codon_start
: 1
note
: GTP-binding protein Roc2; RAS-like protein expressed in neuron
product
: Ras-like without CAAX 2
protein_id
: NP_033091.1
name
Syt4
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:60218904
CCDS:CCDS29109.1
GeneID:20983
MGI:101759
definition
GO_component
: GO:0016021 - integral to membrane [Evidence IEA] [Evidence TAS]; GO:0016020 - membrane [Evidence IEA]; GO:0043005 - neuron projection [Evidence IDA]; GO:0048471 - perinuclear region [Evidence IDA]; GO:0045202 - synapse [Evidence IEA]; GO:0008021 - synaptic vesicle [Evidence IEA]
GO_function
: GO:0005509 - calcium ion binding [Evidence IDA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0005215 - transporter activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO_process
: GO:0007269 - neurotransmitter secretion [Evidence IDA]; GO:0017158 - regulation of calcium ion-dependent exocytosis [Evidence TAS]; GO:0048489 - synaptic vesicle transport [Evidence TAS]; GO:0006810 - transport [Evidence IEA]
codon_start
: 1
product
: synaptotagmin 4
protein_id
: NP_033334.2
name
LOC666073
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:666073
definition
number
: 2
pseudo
: _no_value
name
LOC666073
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:666073
definition
number
: 1
pseudo
: _no_value
name
LOC666100
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:666100
definition
number
: 4
pseudo
: _no_value
name
LOC666100
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:666100
definition
number
: 3
pseudo
: _no_value
name
LOC666100
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:666100
definition
number
: 2
pseudo
: _no_value
name
LOC666100
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:666100
definition
number
: 1
pseudo
: _no_value
name
EG666130
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:666130
definition
number
: 2
pseudo
: _no_value
name
EG666130
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:666130
definition
number
: 1
pseudo
: _no_value
name
LOC666094
(CDS detail)
type
misc_RNA
link
vega
ensembl
NCBI
xref
GI:149269710
GeneID:666094
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 39 ESTs, 2 Proteins
product
: similar to ribosomal protein S25
pseudo
: _no_value
transcript_id
: XR_032753.1
name
LOC433168
(CDS detail)
type
misc_RNA
link
vega
ensembl
NCBI
xref
GI:149269713
GeneID:433168
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 9 mRNAs, 987 ESTs, 9 Proteins
product
: similar to ribosomal protein L21
pseudo
: _no_value
transcript_id
: XR_032770.1
clone name
MSMg01-413N23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-326E18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-344B05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-542C14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-261P04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-168O15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-208K04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-056M16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-297M15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-370O23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-540F04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-393L17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-519N12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-271O14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-186O20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-161M07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-046H20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-384J18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-467A01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-430I17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-340N23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-507F13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-544N02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-320J05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-540B13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-296M21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-296M21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-091H18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-083A07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-512M19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-327I21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-059P23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-126B04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-080L07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-394P01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-139H01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-329N07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-143P16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-543E10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-296G13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-329N07
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-125L12
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-503C24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-054K12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-344J13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-315E19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-412B07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-330J13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-134L01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-439P12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-498M19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-130C01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-264I12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-437L14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-423P11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-429A04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-374J03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-160A08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-461I13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-478A18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-076E10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-079I14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-139J11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-237N23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-361G13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-482P05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-328D05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-109P19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-528M15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-117N08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-457G22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-398J19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-352O20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-187A17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-138O01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-185N07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-054E18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-420A07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-096C07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-451M18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-183H03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-118B21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-189F07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-341K23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-538E11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-380H09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-530K06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-181L02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-533A02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-489M18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-522G17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-477I05
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-242H21
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-010B08
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-191F07
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-203G02
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-075D01
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-180N07
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-263M08
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-091J03
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-311G02
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-343M22
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-062P23
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-164L20
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-276N02
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-015H24
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-300H10
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-001G24
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-072J05
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-093K20
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-205K23
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-163N15
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-125G21
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-077G13
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-204K09
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-194O10
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-327P24
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-195J24
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-020E15
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-236A04
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-133E08
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-183O21
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-187F20
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-308M15
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-100I02
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-103O18
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-212M06
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-046B09
singlet/doublet
doublet
plural/unique
unique
clone name
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doublet
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doublet
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doublet
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clone name
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B6Ng01-252H14
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B6Ng01-346P20
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B6Ng01-136N04
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B6Ng01-007N18
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B6Ng01-176L17
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