BAC Information

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BAC

Clone NameMSMg01-318A04
Chromosome18 (Build37)
Map Location 19,273,957 - 19,274,251
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040658
Downstream geneLOC665624, LOC665629, Dsc3, Dsc2, Dsc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-318A04.T7 (MSMg01no318_a04.b1)MSMg01-318A04.TJ (MSMg01no318_a04.g1)
ACCAG437923AG437924
length648727
length of high quality
(start - end)
46 (84 - 129)295 (73 - 367)
definitionCHROMAT_FILE: MSMg01no318_a04.b1 PHD_FILE: MSMg01no318_a04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:06 2005CHROMAT_FILE: MSMg01no318_a04.g1 PHD_FILE: MSMg01no318_a04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCNGTCTTCTATATTTNCNCCNCTATACAACTCACTATATTTCCCANAT
CCNCNNAATTCACTNTTTTTATTCCCTNANTANTACTCCAATATNTAAAT
NTACCACATTTTCTNTATCCATTCTTCTNTTCANNAACATCTNNNTTCTT
TCCANTTTCTNNATATTANAAANATCCTTTCTATAAACATANTNNNACAT
NNCCCCCTACTACCTNTNNAACCATCTTCTCCCTACNTCCCCNCAANNNN
NATTCCTTCCCCCTCCACTACCACTATTTCCAATTTTCTCATNAACCACC
AAACTNNCCTTCCAAACTCCTCCTCCCNCCTTCTTTTCTTACCACCAATT
GAAGAAGNNNCCCTNTCTTCCCTTNNNNTTTCCAGTTTCNTCCCCNNCCT
NTNTTTTTTATTTTATACCCCCAAAAGAAGAAGAAAGTACGAGGACACTN
CTNNNNTNNNNNNCCNTTCTTCCTTTTTTTTTCCTCCTTCCCCCCCTTTG
GGGGGGGGGGGGGGGGGGGGGGGGGCGGGAAAAAAAAGCNNTCTTNNCNC
TNCCCTTTCCCNTCTCCCTCTCTCCCCTCCTTCCTTCCCCTCTCCTTTTC
CCCCCTTTTCTTCCTTCCTCCCCTTTCCCTTTTCTTTTTTAAAAAAAT
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAAGACACCAAAGGTCATTGGAGTAAATG
ACAATAATGGCTCCACAGTAATATCGATAATGAGGCATATAATGAACTGG
ACTTCACTTTGGAGATCCTCAGTGACCAAAAAGAGAATTGCAAATGAAGT
GGAAATTTAGAGAAGATTAGTCAGGGGTAAAAAGACAAGCCTATTTTGAA
AGGTAAAAATTCAGGTTGCTTGCAATTAGGTATAATGAGATTCTACTGTT
AAGTGAAAATCCATTCAATGACAGAAATAATTTAAATAATGAGAAAATCT
ATGAGAGGAGACAGCAAGGTCCATATATGCCCAATAGATGCTTCAACCTG
AATTCCACCCCTGATAAGCACCCCCCCCCTATTTCACCACAGTCCATTTT
GATTCATTCCACCCATGTATCATGTTGAATACCACAGGATCCTTGTATTG
CAATCCTGAAGTTTTTGCTAGTAATTTAAATTAACCATTTTACCATCCTA
TTTTATTTCATTTACACACGGGAACTTCTCATGCCAGGCAGTGTGGGGTT
ACACTCCTTTTTATCCCCCCGCTCTTCCCGCAAAGCTAAATGCCCGGCGC
CTAATTTTCGGAATTTTCAAAACCCATGCCCGGGGCTTCACCACAATTTA
GATTTTCCTGGCAACCCTTTGGGCGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no318_a04.g1 MSMg01no318_a04.g1 CHROMAT_FILE:
MSMg01no318_a04.g1 PHD_FILE: MSMg01no318_a04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:00:06 2005
         (295 letters)



>mm_chr18_19273757_19274451
          Length = 695

 Score =  563 bits (291), Expect = e-165
 Identities = 294/295 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagacaccaaaggtcattggagtaaatgacaataatggctccacagtaatatcgataatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 aagacaccaaaggtcattggagtaaatgacaataatggctccacagtaatatcgataatg 436

                                                                       
Query: 61  aggcatataatgaactggacttcactttggagatcctcagtgaccaaaaagagaattgca 120
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 435 aggcatataatgaactggacttcattttggagatcctcagtgaccaaaaagagaattgca 376

                                                                       
Query: 121 aatgaagtggaaatttagagaagattagtcaggggtaaaaagacaagcctattttgaaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 aatgaagtggaaatttagagaagattagtcaggggtaaaaagacaagcctattttgaaag 316

                                                                       
Query: 181 gtaaaaattcaggttgcttgcaattaggtataatgagattctactgttaagtgaaaatcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 gtaaaaattcaggttgcttgcaattaggtataatgagattctactgttaagtgaaaatcc 256

                                                                  
Query: 241 attcaatgacagaaataatttaaataatgagaaaatctatgagaggagacagcaa 295
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 attcaatgacagaaataatttaaataatgagaaaatctatgagaggagacagcaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 695
Length adjustment: 9
Effective length of query: 286
Effective length of database: 686
Effective search space:   196196
Effective search space used:   196196
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)