BAC Information

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BAC

Clone NameMSMg01-318L02
Chromosome18 (Build37)
Map Location 5,051,054 - 5,051,258
singlet/doubletsinglet
Overlap geneSvil
Upstream geneLOC621666, Lyzl1, LOC383374, LOC664909, Map3k8, Papd1, EG664931, LOC100039354, LOC433157, 9430020K01Rik, LOC268988
Downstream geneZfp438, LOC100039442, Zeb1, EG664925, Arhgap12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-318L02.T7 (MSMg01no318_l02.b1)MSMg01-318L02.TJ (MSMg01no318_l02.g1)
ACCAG438423AG438424
length761790
length of high quality
(start - end)
205 (80 - 284)217 (161 - 377)
definitionCHROMAT_FILE: MSMg01no318_l02.b1 PHD_FILE: MSMg01no318_l02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:55 2005CHROMAT_FILE: MSMg01no318_l02.g1 PHD_FILE: MSMg01no318_l02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACTGGACCCGCGG
AATTCAAAGCAATTTTTCTACTACAAAAAAGCTTTCTTCAGATGATGCAT
GGGATGGCTGGGCCTGACTCACCGCCCCCTATTTCTTAGATGTGTACTCT
TCATTTCCTTCCCAATAAAATGTGGATCAATCCTGGGCATGCTACAGCAT
CTATCCCTCTATCCAACATGGCATTCACAAGCCTTCTCCATCATTTTATG
GAATACTAGATAATTCCAAAACAAGTGTATCACATATGTCAATGTGGCCC
TAAAGCTGTTATTTCACCAATAATATTTCTTGTTAGAAGGAAGTGATATC
AAAGTTATCACATGAAAACAGAGATTATATTTTTTATTTTCATAGATGGA
TATACTTTTTCTAAGTATTTATCACCCCCCTCTATACAAAACATCTGTGT
TTGGGGTTAGCTGCCGCGTTCATGCAACAGGTAAAGGTGCTTGTCACCAT
AATTGCTGACCTGAGTTTGATCGACTGGTCCCCAGATACTGGAACGATGA
GAACAGATTTCTACTAGTTGTTCTTTTGGCTTCATCTGTATCTCATACAT
CACTCTCCCCACTCTTATGTTCCATATATGCATATGCTAAATAACCAAAT
AAATATGAAGTAATAAAACCCTCCTTCGATGGAGCCTTCACTCTTCACTT
GGTACGAAAAAACAAAGCATTTATCGTTTTCTTAATTTTTGGTCTGTAAT
CCTTATGTTAT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTTTTCGAAAAAACTTCCTCAGGACAAATAAACATCA
CTACTCAAAAAAACAAAAACAAATTCTACCCCAAAAACAAAAAAAACAAA
AAAAAAAACAAAAAAAAAAAAACATGTTATGAGACCAGATAACGAGGCTG
AGACAAATTCTATAGAAAATTCAAAAAACCAAAAGAGGACCAAATAAAAC
AAAAAACAAAAAACCAGGATTGGATTACATAGGGTTTTATTAACCTTAAA
ATTTTTAAATGCTAATGAACAAAACACTACAGCTTCTTGACACTGAACTG
TGGGAAAAAAATACTCAACTAATCCAGCCTGTTTATATGAAGAATATTCT
GACACCATAATGCAAAATAGAAATCCCCCCCCACTGTGGAGGGGTTATGC
CTATATTTCCACAAGAAAAGAAAAGCTATAGGTTCCTTCCAAATTGACAA
AAATCATACATTACCAAGGGAGACCTCCTGAAGATCTTGACTTATTTACA
AGAGGGAGACTATCTTGATCAACAAGATCGGTAATTTGTATATGATGATG
TTTATGTCTCTATATATACGGAAAAGAGCCTCTGAAATCGGATGAAAATT
ATGAATGTCTTACATTCAGCTCAAATAACATTTTAAATTGGGATATAAAA
TATCTCCATGAACCTTGCTTCTTACACTACTTATTAATCGCTATGAATAT
GGTAACACTCAACAATCGGCAAACTTTCGTATTACACGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no318_l02.b1 MSMg01no318_l02.b1 CHROMAT_FILE:
MSMg01no318_l02.b1 PHD_FILE: MSMg01no318_l02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:00:55 2005
         (205 letters)



>mm_chr18_5050854_5051458
          Length = 605

 Score =  373 bits (193), Expect = e-108
 Identities = 202/205 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agctttcttcagatgatgcatgggatggctgggcctgactcaccgccccctatttcttag 60
           |||||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||
Sbjct: 405 agctttcttcagatgatgcacgggatggctgggcctgacttacagccccctatttcttag 346

                                                                       
Query: 61  atgtgtactcttcatttccttcccaataaaatgtggatcaatcctgggcatgctacagca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 atgtgtactcttcatttccttcccaataaaatgtggatcaatcctgggcatgctacagca 286

                                                                       
Query: 121 tctatccctctatccaacatggcattcacaagccttctccatcattttatggaatactag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 tctatccctctatccaacatggcattcacaagccttctccatcattttatggaatactag 226

                                    
Query: 181 ataattccaaaacaagtgtatcaca 205
           |||||||||||||||||||||||||
Sbjct: 225 ataattccaaaacaagtgtatcaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 205
Length of database: 605
Length adjustment: 8
Effective length of query: 197
Effective length of database: 597
Effective search space:   117609
Effective search space used:   117609
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)