BAC Information

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BAC

Clone NameMSMg01-322L06
Chromosome18 (Build37)
Map Location 18,707,071 - 18,707,367
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040647
Downstream geneLOC100040658, LOC665624
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-322L06.T7 (MSMg01no322_l06.b1)MSMg01-322L06.TJ (MSMg01no322_l06.g1)
ACCAG441325AG441326
length743751
length of high quality
(start - end)
567 (45 - 611)294 (75 - 368)
definitionCHROMAT_FILE: MSMg01no322_l06.b1 PHD_FILE: MSMg01no322_l06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:05:43 2005CHROMAT_FILE: MSMg01no322_l06.g1 PHD_FILE: MSMg01no322_l06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:05:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTATTTTTCCCAAGGTCTCATAGTTGCCCAGGTAGGTTTTGAACT
TTTGGTACTGCTATTTCAGCCTCCCAAGTCGTTGGCACTTGAGTTGACAA
TACTCAACGTGAAAACCATAAGAAGTCGCCTTCTAAAATAGTTGTTCAGG
GTAGTCCCAATGACTCTCAAACAAATATATATTATCAATTTAGCACTTGA
TTGCCTCTCATGAGTTGAGGAAATGACCCTCCTCCCAATCATACTGCATA
CTTGGGAAACATGATTTAGATGATTTGAGCTGGATCAGACCTGAAAAGGT
ATTTCTTACCATCCTGCTTCTATGATCCACACAATATTATGCAAGCTGGC
TTGGGCATGAAGCATTATGCCAGCTGTAATACCTAAGGATCTACATGAAA
TTATAATAGTTGGCACTCACACATCAGTTGTAACCAATAGCTACGTAGTT
TCACTTAAGACCTACTCAATCACAGGGAACTCCTCCTGGTTCTCAAAATA
TTCCACTTCTTGTGATTGGTGATGTCATGAACCTTGTAAAAGAATCTACT
ATCACCACTTAGTGTTATGAACCTTGGAAAGGAATCTATTACCTTAGCCA
GAGGCCCATTGTTTATGTACAATACGAAAAGATTACTAATTCTCCCTTGT
AGTTTCAGTATTTTCTAACCAGGTGGGTTGTCTTCCCTGAAGN
CGATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTCATTCCAAATCCATCCTGAATGTC
ATCATAGATAAGTTTGTGTGCCTCTATGTATAGATGAGTGTATATGCATG
TAGATTGCCTGTACTTTGGAAATAATATAAATGTAAATGTTATCCTCTCT
TGTGGAGTTGAATTGTTTGATTTCTACAAAATACGAGTTTCTATTTCTCT
TAATTATCTGTGAAAATTCCTGGTTTTCTTACAGTGATGAAATTTAAAAA
GAAAATAGAAGCACACAGTCTGATTGCTATCCTATTAGAAGCAATATCGA
GATTGATGTACCTATTATTAAGAAATGCCAAAAGATACCATCTACTTCTT
AGCAACAAGGACAGAGTCCTAGAGTATTCACTCTCACAAACCAGATTCTG
TTTGTCCAGGTCTTTGAGACTACAAAGATCTAAGATGCTCTCAGCCCCTT
AAATTCTAGGTAAGATTCTTAAATTGAAAGTGGGGGAAAACATAAAATGT
TTTTTGATTTTACAATAACAAAGATAATTTCAAAATCAGGTATGCAATGG
ATATTAGATATTTTCATTCTACATCAAAAGTGTTCTATTCCTATTGAAAC
ACATTAATTCTATTTGTAGAACACAATCTTTTAATACTTGTCTAACCTTA
TCCCTCAGCTTATAAGTATCAAATTATAATGTCTTTGGATCAAATTGTTT
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no322_l06.g1 MSMg01no322_l06.g1 CHROMAT_FILE:
MSMg01no322_l06.g1 PHD_FILE: MSMg01no322_l06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:05:43 2005
         (294 letters)



>mm_chr18_18706871_18707568
          Length = 698

 Score =  524 bits (271), Expect = e-153
 Identities = 289/297 (97%), Gaps = 4/297 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcattccaaatccatcctgaatgtcatcatagataagtttgtgtgcctctatgtataga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 ctcattccaaatccatcctgaatgtcatcatagataagtttgtgtgcctgtatgtataga 260

                                                                       
Query: 61  tgagtgtatatgcatgtagattgcctgtactttggaaataatataaatgtaaatgttatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgagtgtatatgcatgtagattgcctgtactttggaaataatataaatgtaaatgttatc 320

                                                                       
Query: 121 ctctcttgtggagttgaattgtttgatttctacaaaatacgagtttctatttctcttaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctctcttgtggagttgaattgtttgatttctacaaaatacgagtttctatttctcttaat 380

                                                                       
Query: 181 tatctgtgaaaattcctggttttcttacagtgatgaaatttaaaaagaaaa----tagaa 236
           |||||||||||||||||||||||||||||||||||||||||||||| ||||    |||||
Sbjct: 381 tatctgtgaaaattcctggttttcttacagtgatgaaatttaaaaaaaaaaaaaatagaa 440

                                                                    
Query: 237 gcacacagtctgattgctatcctattagaagcaatatcgagattgatgtacctatta 293
           |||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcacacagtcagagtgctatcctattagaagcaatatcgagattgatgtacctatta 497


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 698
Length adjustment: 9
Effective length of query: 285
Effective length of database: 689
Effective search space:   196365
Effective search space used:   196365
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)