Query= MSMg01no323_c05.b1 MSMg01no323_c05.b1 CHROMAT_FILE:
MSMg01no323_c05.b1 PHD_FILE: MSMg01no323_c05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:06:21 2005
(603 letters)
>mm_chr18_85140725_85141723
Length = 999
Score = 772 bits (399), Expect = 0.0
Identities = 426/437 (97%), Gaps = 6/437 (1%)
Strand = Plus / Minus
Query: 165 ttcagataaggtggtgtgatggatcatggcatctggagtggggtaaagtgtaagaagctg 224
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct: 999 ttcagataaggtggtgtgatggatcatggcatctggagtggggtaaagtgcaaggagctg 940
Query: 225 gacacccctgtgaaggatttttttaaaaagatttattattacatgtatgtacactgattg 284
|||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct: 939 gacacccc--tgaaggatttttttaaaaagatttattattatatgtatgtacactgactg 882
Query: 285 tagctgtcttcaaagggtgtcagatgtcattacagatggctgtgagccacaatctggttg 344
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 881 tagctgtcttcaaagggtgtcagatgtcattacagatggctgtgagccaccatctggttg 822
Query: 345 ctgggatttgaactcagaaccgtctactttatcaataggccaataaggaaaactaacagt 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 821 ctgggatttgaactcagaaccgtctactttatcaataggccaataaggaaaactaacagt 762
Query: 405 gatagttaaagcattcccactgaggtctgagaaacagacagggtaaggtgtcttctctct 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 gatagttaaagcattcccactgaggtctgagaaacagacagggtaaggtgtcttctctct 702
Query: 465 gcagacttaaaggactgtgctggagtctggaatgatgcggtaagaaattaaacattaaac 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 gcagacttaaaggactgtgctggagtctggaatgatgcggtaagaaattaaacattaaac 642
Query: 525 atactgagtctatcaatgtaactaatatgtgaaccaatggtttaataagaaaagggattc 584
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 641 atactgagtctatcaatgtaactaatatgtgaaccaatggtttaa---gaaaagggattc 585
Query: 585 ttttttgactaataatg 601
||||| |||||||||||
Sbjct: 584 ttttt-gactaataatg 569
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 999
Length adjustment: 10
Effective length of query: 593
Effective length of database: 989
Effective search space: 586477
Effective search space used: 586477
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no323_c05.g1 MSMg01no323_c05.g1 CHROMAT_FILE:
MSMg01no323_c05.g1 PHD_FILE: MSMg01no323_c05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:06:21 2005
(538 letters)
>mm_chr18_84955136_84956073
Length = 938
Score = 1009 bits (522), Expect = 0.0
Identities = 534/538 (99%)
Strand = Plus / Plus
Query: 1 aaggccactttctgctctaacattctgctacacagtacacagcagcttggagagatgctg 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 aaggccactttctgctctaacattctgctacacggtacacagcagcttggagagatgctg 260
Query: 61 agaagtcatctggcatatctataggcttccagggaaattacggcttaatcaaaaccagca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaagtcatctggcatatctataggcttccagggaaattacggcttaatcaaaaccagca 320
Query: 121 aaagagtttaatttagaaatcctcatttcttatcccctgattcccatcactttccctgaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaagagtttaatttagaaatcctcatttcttatcccctgattcccatcactttccctgaa 380
Query: 181 gaaattacacagccttgttagagaaccaactcggcatgtctcagactttcccctctggat 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaaattacacagccttgttagagaaccaactcggcatgtctcagactttcccctctggac 440
Query: 241 tcaagcagcttacctccactctgaggtttctttttgagcaatgcaacataagaatgaggc 300
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 441 tcaagcagcttacctccactctgaggcctctttttgagcaatgcaacataagaatgaggc 500
Query: 301 aacatgttgaggactttcgggttcccagcataggtggccattgtgccttgcttcccaggc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aacatgttgaggactttcgggttcccagcataggtggccattgtgccttgcttcccaggc 560
Query: 361 aggacaggtaggggtggtaagcatgcatgtgtgcctgtgtagagcaaagtgcaggaagga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aggacaggtaggggtggtaagcatgcatgtgtgcctgtgtagagcaaagtgcaggaagga 620
Query: 421 atggcggttaatgttttccttagccacccaaattcattgagctgttacaacagatgggct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atggcggttaatgttttccttagccacccaaattcattgagctgttacaacagatgggct 680
Query: 481 atccagtgatctctgaaaggagaccgtgcctgtgttatgttgaaggtcctgtcatgca 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atccagtgatctctgaaaggagaccgtgcctgtgttatgttgaaggtcctgtcatgca 738
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 938
Length adjustment: 10
Effective length of query: 528
Effective length of database: 928
Effective search space: 489984
Effective search space used: 489984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
