Query= MSMg01no324_l06.b1 MSMg01no324_l06.b1 CHROMAT_FILE:
MSMg01no324_l06.b1 PHD_FILE: MSMg01no324_l06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:05 2005
(478 letters)
>mm_chr18_60344676_60345553
Length = 878
Score = 895 bits (463), Expect = 0.0
Identities = 472/475 (99%), Gaps = 1/475 (0%)
Strand = Plus / Minus
Query: 5 gaattctctgatgtcc-aaacgatgtgacttctgacagaaggcttttccacagtcattgg 63
|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 673 gaattctctgatgtccaaaaggatgtgacttctgacagaaggcttttccacagtcattgg 614
Query: 64 atttatagggtttctctccagtatttgtcctgtgatgtatggtgagctgtgatttatgaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 atttatagggtttctctccagtatttgtcctgtgatgtatggtgagctgtgatttatgaa 554
Query: 124 ataatgtatttttgcactcagtacagtcatagggctttcccccagtatgagtcaatggat 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 ataatgtatttttgcactcagtacagtcatagggctttcccccagtatgagtcaatggat 494
Query: 184 atgcagtgggttctgtcttcctgctgaaggctttttcacagtaggcacatcatgtgtagg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 atgcagtgggttctgtcttcctgctgaaggctttttcacagtaggcacatcatgtgtagg 434
Query: 244 gcttcacacctgtttgaatctttttatatataacaagctggggctttttgcagaaggctt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 gcttcacacctgtttgaatctttttatatataacaagctggggctttttgcagaaggctt 374
Query: 304 tgccacatccagtgcactcagatgtcttctcttcagtgtgagctctgtggtatataataa 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 tgccacatccagtgcactcagatgtcttctcttcagtgtgagctctgtggtatataataa 314
Query: 364 gctgggacttctggacaaatgccttctacattctctacatagataaggtttctctctggc 423
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gctgggacttctggagaaatgccttctacattctctacatagataaggtttctctctggc 254
Query: 424 atgaattctctgatgtataatgagggatgattcctgagagaaagttttcctacac 478
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 atgaattctctgatgtataatgagggatgattcctgagagaaagttttcctacac 199
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 878
Length adjustment: 10
Effective length of query: 468
Effective length of database: 868
Effective search space: 406224
Effective search space used: 406224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no324_l06.g1 MSMg01no324_l06.g1 CHROMAT_FILE:
MSMg01no324_l06.g1 PHD_FILE: MSMg01no324_l06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:05 2005
(251 letters)
>mm_chr18_60185388_60186037
Length = 650
Score = 418 bits (216), Expect = e-121
Identities = 244/254 (96%), Gaps = 7/254 (2%)
Strand = Plus / Plus
Query: 1 caggcaccaaatacag--gttttttgtttgtttgttttttttttttttt-gaactgaaga 57
|||||||||||||||| ||||||| ||| ||| ||||||||||||||| ||||||||||
Sbjct: 201 caggcaccaaatacagttgtttttt-ttt-ttt-tttttttttttttttggaactgaaga 257
Query: 58 aaaccataactggtttgaaagacccagtaagggactttaatagcaaactagatggtacag 117
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 aaaccataactgggttgaaagacccagtaagggactttaatagcaaactagatggtacag 317
Query: 118 aagagatggctttacaatcatcttctaagaggatgaaaaataagaaagactgaacaaaga 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 aagagatggctttacaatcatcttctaagaggatgaaaaataagaaagactgaacaaaga 377
Query: 178 ggataaagagggaagaaagtctaagaaattatgagatactatggtgtgtctgtatgtggg 237
|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct: 378 ggataaagagggaagaaagtctaagaaattatgagatactatagtgtgtctgcatgtggg 437
Query: 238 ggtaggggggagtg 251
||| ||||||||||
Sbjct: 438 ggt-ggggggagtg 450
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 251
Length of database: 650
Length adjustment: 9
Effective length of query: 242
Effective length of database: 641
Effective search space: 155122
Effective search space used: 155122
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
