BAC Information

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BAC

Clone NameMSMg01-326I14
Chromosome18 (Build37)
Map Location 89,624,858 - 89,625,453
singlet/doubletsinglet
Overlap geneDok6
Upstream geneLOC665497, LOC100040003, LOC623208, Socs6, Rttn, Cd226
Downstream geneLOC383320, LOC620693, Eif3s6-ps2, LOC665526
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-326I14.T7 (MSMg01no326_i14.b1)MSMg01-326I14.TJ (MSMg01no326_i14.g1)
ACCAG444134AG444135
length733728
length of high quality
(start - end)
531 (45 - 575)615 (75 - 689)
definitionCHROMAT_FILE: MSMg01no326_i14.b1 PHD_FILE: MSMg01no326_i14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:16 2005CHROMAT_FILE: MSMg01no326_i14.g1 PHD_FILE: MSMg01no326_i14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGCGGA
ATTCCTCACATTTCCTTCTTTATTTATTTTTTCCATTTTTATTAGGTATT
TAGCTCATTTACATTTCCAATGCTATACCAAAAGTCCCCCATACCCACCC
ACCCCCACTCCCCTACCCACCCACTCCCCCTTTTTGGCCCTGGCGTTCCC
CTGTACTGGGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCCAG
TGATGGCCGACTAGGCCATCTTTTGATACATATGCAGCTAGAGTCAAGAG
CTCCGGGGTACTGGTTAGTTCATAATGTTGTTCCACCTATAGGGTCGCAG
ATCTCTTTAGCTCCTTGGCTACTTTCTCTAGCTCCTCCATTGGGAGCCCT
GTGATCCATCCATCACCTGACTGTGAGCATCCACTTCTGTGTTTGCTAGG
CCCCGGCCTAGTCTCACAAGAGACAGCTACATCTGGGTCCTTTCAGCAAA
ATCTTGCTAGTGTATGCAATGGTGTCAGCGTTTGGATGCTGATTATGGGG
TGGATCCCTGGTGGTGTGACTCTAACTAACGAAGTGAAAGATCTGTATGA
TAAAAACTTCAAATCTCTGAACAAAGATATTATAGAAGATCTCACAAGAT
GAAAAGATCTCCCATGCTCATGGATTGGCAGGATCAAATTTGTAAAAATG
GCTATCTTGCCCAAAACAATCTACCGAATTCAT
NCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACCCTGAAAAAAATTTAAGTGTCTGT
TACACATATATAATATAATAGTGTGTGTGTGTGTGTGTGAGAGAGAGAGA
GAGAGAGACAGAGACAGAGAAAGAGACAGAGAGAGAGACACAGAGAGAGA
CAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATCACAGTAACATATAA
TTCAATCTTAAGGCCCCTATGTTTTGAGAGTGGAAGAGCTAGTTCTGTCC
TGCCACTGGCTGTAGCACTCAGGAGAGTAGGCCCCACACTTTTCCTGGAC
AACACAATGGAGATAGTCCTGGTGGCAAAATAGCTTAAAGAATGTTACAA
ACATTATTTAATAAGTTAGCAATATCTGTTTCTTGAAAGTCTGCATGATC
TACTTTGATTTGACACCTGTTTACCCAATTAAAGTGCCAAGTTTACATCC
TTCACTTGATCTTTCTAATTAATTACGAATAGTGACAAATAACTATTAAT
TTTATACTATGTGCAAGAATAATAACAAGTTGACTAAAAGAGTCATATAG
GTTAGAAGTACTAAAAGCAAAATTTTTTCTGGCTTTTGGTCTTTGGTGAG
TTCTGGAATTTACCTATTCATATGAGCCATATTTGCTTATAGGCAAAGCA
AATATAGACAAGACATGTTCAAGACACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no326_i14.g1 MSMg01no326_i14.g1 CHROMAT_FILE:
MSMg01no326_i14.g1 PHD_FILE: MSMg01no326_i14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:11:16 2005
         (615 letters)



>mm_chr18_89624498_89625512
          Length = 1015

 Score =  969 bits (501), Expect = 0.0
 Identities = 580/617 (94%), Gaps = 23/617 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   accctgaaaaaaatttaagtgtctgttacacatatataatataatagtgtgtgt--gtgt 58
           ||||||   |||||||||||||||||||||||||||||||||||||||||||||  ||||
Sbjct: 956 accctg---aaaatttaagtgtctgttacacatatataatataatagtgtgtgtgcgtgt 900

                                                                       
Query: 59  gtgtgtgagagagagagagagagagacagagacagagaaagagacagagagagagacaca 118
           ||||||| | | | | | | | |||        ||||  ||||  ||||||||||    |
Sbjct: 899 gtgtgtgtgtgtgtgtgtgtgtgag--------agag--agag--agagagagag----a 856

                                                                       
Query: 119 gagagagacagagagagagagagagagagagagagagagagatcacagtaacatataatt 178
           |||||||  |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 855 gagagag--agagagagagagagagagagagagagagagaggtcacagtaacatataatt 798

                                                                       
Query: 179 caatcttaaggcccctatgttttgagagtggaagagctagttctgtcctgccactggctg 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 caatcttaaggcccctatgttttgagagtggaagagctagttctgtcctgccactggctg 738

                                                                       
Query: 239 tagcactcaggagagtaggccccacacttttcctggacaacacaatggagatagtcctgg 298
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 737 tagcactcaggagagtaggccccacacttttcctggacaacacaatggagctagtcctgg 678

                                                                       
Query: 299 tggcaaaatagcttaaagaatgttacaaacattatttaataagttagcaatatctgtttc 358
           ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 677 tggcaaaatagctaaaagaatgttacaaacattatttaataagttagtaatatctgcttc 618

                                                                       
Query: 359 ttgaaagtctgcatgatctactttgatttgacacctgtttacccaattaaagtgccaagt 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 ttgaaagtctgcatgatctactttgatttgacacctgtttacccaattaaagtgccaagt 558

                                                                       
Query: 419 ttacatccttcacttgatctttctaattaattacgaatagtgacaaataactattaattt 478
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 557 ttacatccttcacttgatctttctaattaattaccaatagtgacaaataactattaattt 498

                                                                       
Query: 479 tatactatgtgcaagaataataacaagttgactaaaagagtcatataggttagaagtact 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tatactatgtgcaagaataataacaagttgactaaaagagtcatataggttagaagtact 438

                                                                       
Query: 539 aaaagcaaaattttttctggcttttggtctttggtgagttctggaatttacctattcata 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 aaaagcaaaattttttctggcttttggtctttggtgagttctggaatttacctattcata 378

                            
Query: 599 tgagccatatttgctta 615
           |||||||||||||||||
Sbjct: 377 tgagccatatttgctta 361


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 98
Number of extensions: 23
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1015
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1005
Effective search space:   608025
Effective search space used:   608025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)