BAC Information

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BAC

Clone NameMSMg01-327A08
Chromosome18 (Build37)
Map Location 90,069,911 - 90,070,259
singlet/doubletsinglet
Overlap genenone
Upstream geneRttn, Cd226, Dok6
Downstream geneLOC383320, LOC620693, Eif3s6-ps2, LOC665526, Txndc10, LOC666779
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-327A08.T7 (MSMg01no327_a08.b1)MSMg01-327A08.TJ (MSMg01no327_a08.g1)
ACCAG444490AG444491
length746742
length of high quality
(start - end)
383 (43 - 425)350 (75 - 424)
definitionCHROMAT_FILE: MSMg01no327_a08.b1 PHD_FILE: MSMg01no327_a08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:50 2005CHROMAT_FILE: MSMg01no327_a08.g1 PHD_FILE: MSMg01no327_a08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAATCCGCGGAAT
TCTCACCTGAGGAACACCGAATGGCAGAGAAGCACCTGAAAAAATGTTCA
ACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCA
CTTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGAT
GCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGAT
TGCAGGCCTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAA
ACTGGATATAGTACTACCGGAGGATCCAGCAATACCTCTTCTGGGCATAT
ATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATGTTC
ATAGCAGCCTTATTTATAATACCCCCACCCTGTAAGGAACCCAGATGCCC
CTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGAGT
ACTACTCAGCTATTATAAAGAATGAATTTATGAAATTCCTAGGCACATGG
ATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAGTAT
CTCACACAATATGTACTCACCGATAAGTGGATATTAGCCCAAAACCTAGG
ATATCCCATATATAAGATACTATTTCCTACACACATGAAACTCATGAAAA
TTAATACTGAAGTGTGGACACTATGCCCCCTCCTTATAAGTGGGAN
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTTAATTTGATAAAATAAAACTACA
CATCTGGACTGTAAAAAAAAATAATAATAAAATTAAAAGAAACTACACAT
CTATGAATATCAATAACTGTCAAACTGGATGAACATAATGAGAGTCATAT
TTAGTCACAACAGAATTTAAACATTGGAAGCTACAGAAAAATAAAAGAAT
CTTGAAACAGACTGGAAGAAATATGTGCAAAGAACTATGATACAAATAAT
TGCTAATTACAGCATGAAACAAGTCCAGAAGATGGTGAAGTGATAACTTA
TCACAATGCAACTAAACACATTCTGCCTGGAATTCTCTACTCAAGATCTA
TTTGCACAAAACAGGGATGGAGTCACCCCCACAGAGTTCACAGAATTCAT
TTTCAGCAGAAAAGAAACACAATGACGAATTTATTTTTGGTTGAACTAAA
ATGACAGAACAAAGTGAAGTACAGAGGGTCAGGAAATTGAATGGAGGTGT
GTAGCAGTGGGGGATGGTGAACCAGAGGTAACCACAAGAAAGTCTCAGAT
GCAAGGAAAGCAAGAGGTTCCCAAGACCCAAGGGAGATGACATTAACCAA
AATTCCCAACAAAGGGGAGATAATATCCAGTGGATAAGCTCGGCCCCAGG
TTGAAGGATGAGGCCACTCATCCATCTCATAAATTTTAATCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no327_a08.g1 MSMg01no327_a08.g1 CHROMAT_FILE:
MSMg01no327_a08.g1 PHD_FILE: MSMg01no327_a08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:11:50 2005
         (350 letters)



>mm_chr18_90069710_90070459
          Length = 750

 Score =  654 bits (338), Expect = 0.0
 Identities = 347/350 (99%), Gaps = 1/350 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcttaatttgataaaataaaactacacatctggactgtaaaaaaaaataataataaaatt 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 202 tcttaatttgataaaataaaactacacatctggactgtaaaaaaaaataa-aataaaatt 260

                                                                       
Query: 61  aaaagaaactacacatctatgaatatcaataactgtcaaactggatgaacataatgagag 120
            |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 261 taaagaaactacacatctatgaatatcaataactgtcgaactggatgaacataatgagag 320

                                                                       
Query: 121 tcatatttagtcacaacagaatttaaacattggaagctacagaaaaataaaagaatcttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcatatttagtcacaacagaatttaaacattggaagctacagaaaaataaaagaatcttg 380

                                                                       
Query: 181 aaacagactggaagaaatatgtgcaaagaactatgatacaaataattgctaattacagca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaacagactggaagaaatatgtgcaaagaactatgatacaaataattgctaattacagca 440

                                                                       
Query: 241 tgaaacaagtccagaagatggtgaagtgataacttatcacaatgcaactaaacacattct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgaaacaagtccagaagatggtgaagtgataacttatcacaatgcaactaaacacattct 500

                                                             
Query: 301 gcctggaattctctactcaagatctatttgcacaaaacagggatggagtc 350
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcctggaattctctactcaagatctatttgcacaaaacagggatggagtc 550


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 350
Length of database: 750
Length adjustment: 9
Effective length of query: 341
Effective length of database: 741
Effective search space:   252681
Effective search space used:   252681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)