BAC Information

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BAC

Clone NameMSMg01-329L04
Chromosome18 (Build37)
Map Location 16,436,423 - 16,436,760
singlet/doubletsinglet
Overlap genenone
Upstream geneAqp4, LOC665473, Chst9, LOC670012, LOC100040551, EG225228, LOC100040202, Ppia-ps18_172.1, EG665509
Downstream geneCdh2, LOC665519, 1700001G01Rik, 4921533I20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-329L04.T7 (MSMg01no329_l04.b1)MSMg01-329L04.TJ (MSMg01no329_l04.g1)
ACCAG446456AG446457
length954757
length of high quality
(start - end)
87 (125 - 211)339 (76 - 414)
definitionCHROMAT_FILE: MSMg01no329_l04.b1 PHD_FILE: MSMg01no329_l04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:15:15 2005CHROMAT_FILE: MSMg01no329_l04.g1 PHD_FILE: MSMg01no329_l04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:15:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTTTCCCCTTACTCCTCCCTTTCTTTTTCCTCCTTTTCTTTTACTTC
GTACCGTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCAGACACTCAGGCAGCTACTCCAAATCTCTATAGGAAAAAC
CTAGGGTTTCCTGAGAATTTGTTACAAGTCTGGGTTAACGATAAAATATA
GAATTTTGGTGATAGGGCATAGTATATGTGTGGTTGACTTCCTAGGTGAA
CCAAGCTTTCGTATAGCTGGCATTCCATTCTAATCTCTTGTGAGTTGTCT
CAGAGAGCCCATCTTAGGCACATTTCCTCTATACCCATCATTTGTCCTGT
TACTTCCATTTTATTAGATGCCATATGAGCTTACAGCTCATTGCTTCACC
TTTTTATTGCCCTGCTCTTGTTTTTTTATTCTCGCCGTATCAGTACCTTC
TTAGTTTTTCGTATTCATCCGTTCATTAGCACCCCACCCCCTGCCCTTTT
TTTTTTTCCCCTCTTAAACATCTGCATCCTTCATTCTTTTTGCTTTTGTC
TACATTTTTTTCCCTTTTGTTTTCCTTACCATTTTCACCTATCATTCCCT
TCCTTTTCCTTTTTTCCTTCCCTTGTATTCACTTTTTTATCACCTGCCTT
CCTTTTTGTTTTCCGTTTATTTAACTACTTCCCTTTCTCTTTTTTTTTTT
TCTCCACCCTCTTTTTTTTTCTTATTTTGTAATTATCCCCCTATTTTCCC
CTACCTTCCCCTTCCGCTTTCTCCTCTCCGCGTTTTTTTTCGCTCTTTAC
CGCCTTTTTCACGCCTTTTTTATTTTCTTATTTTTTTCCACCCCTTCTCC
CCTTTTTTACCTTTACCTTATCCCATTTTCGCTTCCATATCTATCACTTG
CCCTCCTTTTTCTTCTCTCCCACCATATTCTTTATCTACCAATTATTGAT
TTTA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTCCAAATATGAAGAGGGAGATCAA
AAAGATTAAAAATACATTATTTATGCCAATTAGACTTAATCTCAGTAGAG
TCCCTACTCTTTATTGCGCATATACTTGCCTATTATTTGTATTTCAAAAA
TAACAGCCAAGTGTTACATAACATAGAATACCCAGCCCACTGAGAAATGG
AATGAAAGCATTCTGATTTCATGTGACGGAACATGGCCGATCCAAGAAGT
TTTCTGAATTCTTCTGCATGCTGAATAAAAAGCAAGCTTCTATGGCGCTC
TCAGACCTCTCAGAGAGAGATTTTGACTACCGCCATCCCTCATAGTCTTC
AAACATAGGCTTTTGTTACAATGCTGTGTCTGTTCAATGCTTTACCCGAA
TTGACTGATCACAGTATAAGTTTGTCAGATATTTACACCATGTTACGTCA
TTTCTAGTTAACATGTAACCCTTTCCTACAGTTTATCATGCATGCTTGTA
GGCCTTTATCGCTTGTGTATCATCCGTGCCACGCCCGTAATTTCATATGC
TATTCTTTTTGTATCGTTTGTTTTTCTCCCTATCTACTTTTTATTCCCCC
TGTTTCCCTGTTTAGTTTCCCTTTGTCCTTCTACCGTTTATCTAATCTGA
TAGTACCCTTTCTCCTTCTCTTTTTTTCTTGTTTTATCCTTTCCTTTCCT
TCACACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no329_l04.g1 MSMg01no329_l04.g1 CHROMAT_FILE:
MSMg01no329_l04.g1 PHD_FILE: MSMg01no329_l04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:15:15 2005
         (339 letters)



>mm_chr18_16436222_16436960
          Length = 739

 Score =  592 bits (306), Expect = e-173
 Identities = 330/338 (97%)
 Strand = Plus / Minus

                                                                       
Query: 2   tccaaatatgaagagggagatcaaaaagattaaaaatacattatttatgccaattagact 61
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 tccaaacatgaagagggagatcaaaaagattaaaaatacattatttatgccaattagact 480

                                                                       
Query: 62  taatctcagtagagtccctactctttattgcgcatatacttgcctattatttgtatttca 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 taatctcagtagagtccctactctttattgcgcatatacttgcctattatttgtatttca 420

                                                                       
Query: 122 aaaataacagccaagtgttacataacatagaatacccagcccactgagaaatggaatgaa 181
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 aaaataacagccaagtgtaacataacatagaatacccagcccactgagaaatggaatgaa 360

                                                                       
Query: 182 agcattctgatttcatgtgacggaacatggccgatccaagaagttttctgaattcttctg 241
           ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| 
Sbjct: 359 agcattctgatttcatgtgacagaacatggctgatccaagaagttttctgaattcttcta 300

                                                                       
Query: 242 catgctgaataaaaagcaagcttctatggcgctctcagacctctcagagagagattttga 301
           ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 299 catgctgaagaaaaagcaagcttctatggtgctctcagacctctcagagagagattttga 240

                                                 
Query: 302 ctaccgccatccctcatagtcttcaaacataggctttt 339
           ||| ||||||||||||||||||||||||||||||||||
Sbjct: 239 ctatcgccatccctcatagtcttcaaacataggctttt 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 739
Length adjustment: 9
Effective length of query: 330
Effective length of database: 730
Effective search space:   240900
Effective search space used:   240900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)