BAC Information

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BAC

Clone NameMSMg01-330B12
Chromosome18 (Build37)
Map Location 59,815,039 - 59,815,351
singlet/doubletsinglet
Overlap genenone
Upstream geneIsoc1, Adamts19, A730017C20Rik, 4833446K15Rik
Downstream geneLOC667549, EG240327, LOC546714, EG225594, F830016B08Rik, LOC667578, EG667584, LOC435565, Iigp1, EG629292, LOC667597, 2010002N04Rik, Dctn4, Rbm22, Myoz3, Synpo, LOC100042675
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-330B12.T7 (MSMg01no330_b12.b1)MSMg01-330B12.TJ (MSMg01no330_b12.g1)
ACCAG446743AG446744
length734737
length of high quality
(start - end)
319 (49 - 367)286 (75 - 360)
definitionCHROMAT_FILE: MSMg01no330_b12.b1 PHD_FILE: MSMg01no330_b12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:15:45 2005CHROMAT_FILE: MSMg01no330_b12.g1 PHD_FILE: MSMg01no330_b12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:15:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCAAAGACTTCCGCTGTAATGCTAATGAAGGAATGGGACTGCT
AGAAAGGCAAAGTCAAACAGGCAAACCGAATGGCTTTCTTCTTCCACATT
CTTAAAATAGGCCAGCAGAATTTGTGGCTCAGATTATAGGAGTGTCTTCC
TATCTCAAAATCTGGATTAAAGGTGTGTCTTTTCACAAATTAAAAAAAAC
AAAAAACAAAAAAAAAAAAAACAAAAAAAACCCAACTGGGTTAAAGACAT
GTTTTCCCTTCTCAAAAACTCCATATTCGAAATGGGTTTTCCTACTTCAA
TTTAAACAAAACTTCTTCTTTTTTATACCCCCCTCCTCTAAAATTTAGTT
AATTCCAGAAGTAATCAAGTTGACAACCAAAAATAACCATCACCGATATC
TTTTAAGAGGTCAAACGGTATTGACTCTAACAGTCTTAAGGATATGGATT
TTGGCACATTACACAACACTCTTCCAATAGAAATTTGTTATCTGAGCCTT
AACAGCTGTAAGAGTTCAGAGACCAATTTCAAACTAGAATTTGACAGTTA
GTTATGTGCACCGTGACACTTCTTCAGATGATGTGGAAGAAACTCGGGGC
TCAAGAACCTGAAATCAATTTACAGGTGATTCACACTAGTTACAGGTCCC
GAAGAAATCCTCTTTCAAAATAAGGATAGAATTN
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCATCTTACATCAGTCAGAATGGCTAA
AATCAAAACCTCAGGTGACACCAGATGCTGGAGAAGATGTGGAGGAAGAG
GAACATTCCTCCATTGCTGGTGGGATTGCAAACTGATACTACTTTGGAAA
TCAATCTAGGATTACCTCAGAAAATTGGAAATAGACCTACCTGAAGACCC
AGCTATACCACTCTTTGGCAAATACCCAAAAGACACCCCACCATGCCCCG
GTGACATGTGCTCCATGATGTTCATGGTAAACTTATTTTTAATTGCCAGA
GCTGGAATCTTTTATAGATATCCCCTACATGAAGAATGAATACAGAAAAT
GTGGTCTGTTTACACAATGGAATACTGTTCAGCTATTAAGAACAAGGGCA
TCATGAGTTTTGCAGGCAAAAGGATGGAACTAGAAAATATCCTGAATGAA
GTAACCCAGACTCAAAATGACATACATGGTATGTACTCACTAGTATGTGG
ATATTAGCCAAAAAGTACAGAATATCTAGGAACAACCCACAGAATTTAAG
AAGTTTAACAAGCAGAAAGGACAAATGATGTTTCAATCCCACTTAAAAGG
GGGAAGAAAATAATCATGGGAGACACAGAGAGTAAGGAATTGTGTGAAAC
TGCCTAAGAGGAGGTAAAAGGTGAAAAAGTTCCCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no330_b12.b1 MSMg01no330_b12.b1 CHROMAT_FILE:
MSMg01no330_b12.b1 PHD_FILE: MSMg01no330_b12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:15:45 2005
         (319 letters)



>mm_chr18_59815009_59815727
          Length = 719

 Score =  545 bits (282), Expect = e-159
 Identities = 306/314 (97%), Gaps = 1/314 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccaaagacttccgctgtaatgctaatgaaggaatgggactgctagaaaggcaaa 63
           |||||||||||||| |  ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 343 ggaattccaaagacataggctctaatgctaatgaaggaatgggactgctagaaaggcaaa 284

                                                                       
Query: 64  gtcaaacaggcaaaccgaatggctttcttcttccacattcttaaaataggccagcagaat 123
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 gtcaaacaggcaaacagaatggctttcttcttccacattcttaaaataggccagcagaat 224

                                                                       
Query: 124 ttgtggctcagattataggagtgtcttcctatctcaaaatctggattaaaggtgtgtctt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 ttgtggctcagattataggagtgtcttcctatctcaaaatctggattaaaggtgtgtctt 164

                                                                       
Query: 184 ttcacaaattaaaaaaaacaaaaaacaaaaaaaaaaaaaacaaaaaaaacccaactgggt 243
           ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct: 163 ttcacaaattaaaaaaaacaaaaaacaaaaaaaaacaaa-caaaaaaaacccaactgggt 105

                                                                       
Query: 244 taaagacatgttttcccttctcaaaaactccatattcgaaatgggttttcctacttcaat 303
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 104 taaagacatgttttcccttctcaaaaactccatattcgaaatggattttcctacttcaat 45

                         
Query: 304 ttaaacaaaacttc 317
           ||||||||||||||
Sbjct: 44  ttaaacaaaacttc 31


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)