BAC Information

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BAC

Clone NameMSMg01-330I13
Chromosome18 (Build37)
Map Location 60,753,938 - 60,754,226
singlet/doubletsinglet
Overlap geneSynpo
Upstream geneLOC667549, EG240327, LOC546714, EG225594, F830016B08Rik, LOC667578, EG667584, LOC435565, Iigp1, EG629292, LOC667597, 2010002N04Rik, Dctn4, Rbm22, Myoz3
Downstream geneLOC100042675, Ndst1, Rps14, LOC667619, Cd74, Tcof1, LOC100042699, Arsi, Camk2a, Slc6a7, Cdx1, Pdgfrb, Csf1r, A630042L21Rik, Slc26a2, Pde6a, EG667279, Ppargc1b, LOC667675, 4933429F08Rik, Csnk1a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-330I13.T7 (MSMg01no330_i13.b1)MSMg01-330I13.TJ (MSMg01no330_i13.g1)
ACCAG447064AG447065
length788848
length of high quality
(start - end)
32 (80 - 111)289 (124 - 412)
definitionCHROMAT_FILE: MSMg01no330_i13.b1 PHD_FILE: MSMg01no330_i13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:15 2005CHROMAT_FILE: MSMg01no330_i13.g1 PHD_FILE: MSMg01no330_i13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAGGGNNGGAAN
NANANNAGTTCCGAAAAAAGCTATTAAGATTCTTTTGCTGTTATTATTAA
AGATATGTTATAATTTTTACCTTATAGTCCACACCTTCTGAGCAGATCTC
TGCAGATCTACAGAGATTTACTGTCTTGCAGTTATGCTATATAGACAAAT
AGATGACTTCTATAAGTCTTAAATGATCGATCCCTATAGAATTCCCAAAA
TTTTATCAGTGAATAATAATGTCCTTTAAAATAGAAACCCAATAAATCCA
TTATCCGAAAAACCAAATTTTTTTTTTTTAAACCGGGGAAACCCACCAAA
GGGGCCCCCAGGGTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCCCCCCT
TTTTTTTTTTTTTTATGATAAAAATTGAATGTAGAGAAGAGACGCTCCCC
TTTTTTTAAAAAAAAATCCACAAAAAAAATTTTTTTTTTTGGTGGGGTGG
CGGTGTATTTATACTTATACTATTTTTATATATTCATCTATACATAATTA
TATATCTCTAATTAATAACATCAAATAAAAAATCCATAATGATTCATTTC
CCTCTTTCTATCCCCTTATTTATACACCTCGCATTTTAAATTTAACACTC
ACTATTCATATTCAATTTGCACTTTTAAAGAATTTATTTTTTAAGTTTAT
TTTTACGCCACCCTACACCATCTCTTTTTTATTTTTGACCTTTTTATTCC
GCTACATACTATATTTGTTTTATAACTTTATTTAAATT
TTTTTTTTTTTTTTNNNNATANTNTTTATAGCTTTCTTCTTCTTNCCACT
ATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGAGCCTGGGGCTGGGGGTGCTGGAGT
TAGATGAGGCACAAATATATGACGGTGGGGGAAAATATTAGGATGTTGTT
AAAGGTAAGGGATGATGCGATTTTGGAGTGATTAGTAGATTTGCCCACAT
ATCAGGGTTATCTAGAGCTCCTGAGTAAGGTTAGGGGAAGCTAGGGTCAG
GATGGAATAAAGTCAGGGTTGGAATGGAGTGCATCGGAATAGAGGGGTGA
TCTTGGTAGGTTCCTATTGCCCATGGTTTTGATAACCAGGCCCTGGGAAG
ATGAGAGAGTACTCTTTNCTGATTTGCCCANAGCTATACTTGTAGTTACT
GAGTCCCAAGCTAGGGAAGCCCCCCTGAGAAGAAACACTAATAAAATTCT
AGCTCATGCTTTGGCATACATATATCAGCTTCTACCTGCAATTCCTGGGA
TAACCAGGAGGGGGCCGTCTTTGAGAAGCTACAGTTTCTGTTCCCGCAGT
TGTCATTAGTGACTGCCTTCTCACTTAACTGGTCTCTTAAACCCTCCCCC
AGCTAGCCCTGTTTTCCTGCCTTGTTGCCTCTTTGTATAAATTTGGTAGC
AATTAATTGCGTTTCTGGCATTCATTGTTGTCTTCCTGTTCCCTTTTTTT
GCCCTCTTTCTTGTAAGCCTTTTTTCCTTTCTTTTCCATGAGCTTGCGGT
CCCGTACAACAAAATATATTCTTGAAAAATCAGCTGGGTATCTTTCGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no330_i13.g1 MSMg01no330_i13.g1 CHROMAT_FILE:
MSMg01no330_i13.g1 PHD_FILE: MSMg01no330_i13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:15 2005
         (289 letters)



>mm_chr18_60753738_60754426
          Length = 689

 Score =  536 bits (277), Expect = e-157
 Identities = 286/289 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agagcctggggctgggggtgctggagttagatgaggcacaaatatatgacggtgggggaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 agagcctggggctgggggtgctggagttagatgaggcacaaatatatgacggtgggggaa 430

                                                                       
Query: 61  aatattaggatgttgttaaaggtaagggatgatgcgattttggagtgattagtagatttg 120
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 aatactaggatgttgttaaaggtaagggatgatgcgattttggagtgattagtagatttg 370

                                                                       
Query: 121 cccacatatcagggttatctagagctcctgagtaaggttaggggaagctagggtcaggat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 cccacatatcagggttatctagagctcctgagtaaggttaggggaagctagggtcaggat 310

                                                                       
Query: 181 ggaataaagtcagggttggaatggagtgcatcggaatagaggggtgatcttggtaggttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 ggaataaagtcagggttggaatggagtgcatcggaatagaggggtgatcttggtaggttc 250

                                                            
Query: 241 ctattgcccatggttttgataaccaggccctgggaagatgagagagtac 289
           ||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 249 ctattgcccatgggtttgagaaccaggccctgggaagatgagagagtac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)