Query= MSMg01no330_l10.b1 MSMg01no330_l10.b1 CHROMAT_FILE:
MSMg01no330_l10.b1 PHD_FILE: MSMg01no330_l10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:29 2005
(326 letters)
>mm_chr18_46972952_46973680
Length = 729
Score = 511 bits (264), Expect = e-149
Identities = 299/312 (95%), Gaps = 3/312 (0%)
Strand = Plus / Minus
Query: 7 attctccagaactgtaggacagggtctgttgctagaaaaggctcgtgtacggctctgtta 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 attctccagaactgtaggacagggtctgttgctagaaaaggctcgtgtacggctctgtta 459
Query: 67 cagcatctctcccactcaaacagaagaggaagaggtcgggggccacaggagcagacccag 126
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 458 cagcatctctaaaactcaaacagaagaggaagaggtctggggccacaggagcagacccag 399
Query: 127 tacacgcaggaagaacacttagaggtttggggcagtgcttacttaccagtgtgtatataa 186
||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct: 398 tacacgcaggaggaacacttggaggtttggggcagtgcttacttaccagtgcgtatataa 339
Query: 187 atctattcagacttttatccatctatttcaccacaatacaacttcttacaaatggtaata 246
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 338 atctattcagacttttatccatctatttcaccacaatacaacttcttacaaacggtaata 279
Query: 247 ---ctaagcaggtgtggcaagccccggggaagtcatagcctcatacttaaaacgagagga 303
||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 278 atactaagcatgtgtggcaagccctggggaagtcatagcctcatacttaaaacgagagga 219
Query: 304 acaaaaaatcct 315
||||||||||||
Sbjct: 218 acaaaaaatcct 207
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 326
Length of database: 729
Length adjustment: 9
Effective length of query: 317
Effective length of database: 720
Effective search space: 228240
Effective search space used: 228240
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no330_l10.g1 MSMg01no330_l10.g1 CHROMAT_FILE:
MSMg01no330_l10.g1 PHD_FILE: MSMg01no330_l10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:29 2005
(516 letters)
>mm_chr18_46803411_46804330
Length = 920
Score = 890 bits (460), Expect = 0.0
Identities = 504/525 (96%), Gaps = 12/525 (2%)
Strand = Plus / Plus
Query: 1 tgttctcacttaatgaggaaaggaaaaaagcctatgccaagactaggatctaccataaaa 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 195 tgttctcacttaatgaggaaagg-aaaaagcctatgccaagactaggatctaccataaaa 253
Query: 61 acgaatctggtggtcacactataaactgccaaagatacagctacacaacacaaacacttg 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 254 acgaatctggtggtcacactataaactgccaaagatacagccacacaacacaaacacttg 313
Query: 121 tctgtacatataaga-------acagtgtataccgggatctatagtgcccacagtttcac 173
||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct: 314 tctgtacatataagaagagtgcacagtgtataccgggatctataatgcccacagtttcac 373
Query: 174 ttctacctagtatgttggaacataagtctatgtaggtggggagctatggaaatcattgtt 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 ttctacctagtatgttggaacataagtctatgtaggtggggagctatggaaatcattgtt 433
Query: 234 ttagtaagtcagacttcaccaagcatcctccaaccaataaacccacagtgaaataaacta 293
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 434 ttagtaagtcagacttcaccgagcatcctccaaccaataaacccacagtgaaataaacta 493
Query: 294 tggacattccctgttaagaaaatgaaaaattaaacaaaacaggtacatgcctgacctccc 353
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 tggacattcccagttaaaaaaatgaaaaattaaacaaaacaggtacatgcctgacctccc 553
Query: 354 tggagattgacaaattccttaagatcaccgagacttctctaca----gcaaaatatgctg 409
|||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 554 tggagattgacaaattccttaagatcactgagacttctctacatacagcaaaatatgctg 613
Query: 410 gcttgatgtcaatattactgattcatcttacaaaggaacactgtgctacaataattttaa 469
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 614 gcttgatgtcaatattactgattcatcttatgaaggaacactgtgctacaataattttaa 673
Query: 470 gatatgagacttanatcttttgaaaattgtatttatgtattgtgg 514
||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 674 gatatgagacttaaatcttttgaaaattgtatttatgtattgtgg 718
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 920
Length adjustment: 10
Effective length of query: 506
Effective length of database: 910
Effective search space: 460460
Effective search space used: 460460
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
