Query= MSMg01no331_m18.b1 MSMg01no331_m18.b1 CHROMAT_FILE:
MSMg01no331_m18.b1 PHD_FILE: MSMg01no331_m18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:45 2005
(682 letters)
>mm_chr18_48121620_48122701
Length = 1082
Score = 1131 bits (585), Expect = 0.0
Identities = 650/681 (95%), Gaps = 17/681 (2%)
Strand = Plus / Plus
Query: 5 gaattctgtaggatatccgtaatatgacagttggccaaattgttgttactgtattgttca 64
||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct: 205 gaattctgtaggaaatctgtaatatgacagttggccaaattgttattactgtattgttca 264
Query: 65 tctgtcctcagaaaggtgttcatcaaatgatcatctttccagaaacacaccactgcacac 124
|||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct: 265 tctgtcctcagaaaggtgtttatcaaatgatcatctttccagaaacacaccaccacacac 324
Query: 125 tacatcaagtactcctgttcccttccccctgcccactgagagccaacttgtgatagcttc 184
|||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct: 325 tacatcaagtactcctgtccccttccccctgctcactgagagccaacttgtgatagcttc 384
Query: 185 ttgatttaagaatctcctggcctaatccccatcaaaattccaactcaattcttcacagag 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttgatttaagaatctcctggcctaatccccatcaaaattccaactcaattcttcacagag 444
Query: 245 ttagaaagggcaatttgcaaattcatctggaataaaaaaaaaac---ctagaatagcaaa 301
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 445 ttagaaagggcaatttgcaaattcatctggaataaaaaaaaaaaaaactagaatagcaaa 504
Query: 302 aactatcctcaacaacaaatgtacctctggtggaatcaccatccctgacctcaagctgta 361
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 505 aactatcctcaacaacaaatgtacctctggtggaatcaccgtccctgacctcaagctgta 564
Query: 362 ctacagagaaattgcgataaaaactgcttggtagtggtacaatgacagacaggtagatca 421
|||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 565 ctacagagaaattgtgataaaaaccgcttggtagtggtacaatgacagacaggtagatca 624
Query: 422 atggaatagaattgaagacccagaaatgaacccagacatctatggtcacttgatctttga 481
||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 625 atggaatagaattgaagacccagaaatgaacccagacatctatggtc--t---------- 672
Query: 482 caaaggagctaaaaccagtcagtagaaagaagacagcattttcaacaaatggtgctggct 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 --aaggagctaaaaccagtcagtagaaagaagacagcattttcaacaaatggtgctggct 730
Query: 542 caagtggcagttagcatgtagaagaatgcaaattgctccattcttctctccttgtacaaa 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 caagtggcagttagcatgtagaagaatgcaaattgctccattcttctctccttgtacaaa 790
Query: 602 gctcaagtctaagtggctcaaggaactccacataaaaccagagacactgaaacttatgag 661
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct: 791 gctcaagtctaagtggctcaaggaactccacataaagccagagactctgaaacttatgag 850
Query: 662 aagaaagtggggaagagcctc 682
|||||||||||||||||||||
Sbjct: 851 aagaaagtggggaagagcctc 871
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1082
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1072
Effective search space: 720384
Effective search space used: 720384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no331_m18.g1 MSMg01no331_m18.g1 CHROMAT_FILE:
MSMg01no331_m18.g1 PHD_FILE: MSMg01no331_m18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:45 2005
(679 letters)
>mm_chr18_48285405_48286483
Length = 1079
Score = 1033 bits (534), Expect = 0.0
Identities = 567/578 (98%)
Strand = Plus / Minus
Query: 102 taaataaataaatatcaataatggggaggggaagaaactattattcaacaaacaatattt 161
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1079 taaataaataaatatcaataatggggagggggagaaactattattcaacaaacaatattt 1020
Query: 162 gagagattgatttacacctaaagaaattaatgaattattaccttacatcaggagaaacct 221
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1019 gagagattgatttacacctaaagaaattaatgaattattaccttacatcaggagaaaccc 960
Query: 222 aaatcaattccagataatatcaagggctgaagagatggctaagtgattaagagcacggac 281
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 959 aaatcaattccagataatataaagggctgaagagatggctaagtgattaagagcacggat 900
Query: 282 tgctcttccagaggtcctgagttcaattcccagcaaccacatggtagctcatgaccacca 341
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 899 tgctcttccagaggtcctgagttcaattcccagcaaccacatggtagctcataaccacca 840
Query: 342 tctgtaatgggatctgatgccctcttctggtgtgtcagaagacaaagatggtgtactcac 401
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 839 tctgtaatgggatctgatgccctcttctggtgtgtcagaagacaaagatggtgtactcat 780
Query: 402 ataaaataaataaaaatcaaaataacaccaaatttgaatctgtactgaaaagatgctaaa 461
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 779 ataaaataaataaaaatcaaaataacaccaaatttgaatctgtactgaaaagttgctaaa 720
Query: 462 atttcttacaatgaaatgattcagtagcattagtataagaaaacattattaaaactaact 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 atttcttacaatgaaatgattcagtagcattagtataagaaaacattattaaaactaact 660
Query: 522 cacatgttaaatttaataagacattaccttttaatttcaaatcttcattaaccccatatc 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 cacatgttaaatttaataagacattaccttttaatttcaaatcttcattaaccccatatc 600
Query: 582 tgacagagggctaatatccaaaaaaatatgaaaatatcccaataaattaactttcaaaaa 641
||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 599 tgatagagggctaatatccaaaaaaatacgaaaaaatcccaataaattaactttcaaaaa 540
Query: 642 acaaataacacaatttaaaaatggtgtacagtgctaaa 679
|||||||||||||||| |||||||||||||||||||||
Sbjct: 539 acaaataacacaattttaaaatggtgtacagtgctaaa 502
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1079
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1069
Effective search space: 715161
Effective search space used: 715161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
