TCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAAATGTCACACAATTGCAGAAACTATCTGCAGCTGGCAAATTCA
ATCACATTCACAAAACAAATCAGAGTCAACTGTTCTTGACAATCCAAGGA
TCCCTATATCCCATACCTGGGATCAAAACAAAACAAAACATATTCTCACA
AGGTAATTTCTGTGGAACATGAGTTAGAATTGCTCATAATTCCTGTGGGT
TTACAACGATTCTCAAAGGCAATGTTAGTCAAAGATGGGAAAGAAAAGGG
TGTATGATGAACTCGGCTTAAAAGAAGGAAGCAAAAAAAAAATGCCATCA
CTTCTGTCAGTACCAAAGCTAGGAACGAGAAATAGTATCACCATCAAAAC
TTTCGATATTTGCTGTTCGTTGAAGAAAAGTGGCTCAGAAGGGAAATAGT
ACGAGACTGCCTACAGATCCAGCTTTCCTGGGAGCATAAATTTAGCAACA
TAAAATCCTTGATGCTATAAAAACTTTTTGGAACATTTACTCTTACTAGA
GGAAACCTATGCCTATGTTGATAGAGATAGACCCCAGAACGTGAGCCTCA
AGATTCCTGTGCAATTGGTCTTTGGGCCACATACCACAAGCATTTGAGGA
GTCAACTCTGCACTCACAGAACAGAAACACCTTCCTTTTTACATGAAGTC
CTACTTGACATTGAAGTGTCACTTAGATACATAAGGCC

CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCA
GAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGA
TCAAAAAGTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAA
ATCCGTCTGGCGGTTCCTCAGAAAATTGGACATAATACTACCGGAGGATC
CAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGTTAAG
AAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGTCAG
AAGCTGGAAAGAACCCAGATGCCCCTCCACAGAGGAATGGATACAGAAAA
TGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAA
TTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAG
TGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAA
GTGGATATTAGTCCAAAACCTAGGATAACCAAGATATAAGATACAATTTC
CTACACACATGAAACTCAAGATAAATGAAGACTGAAG

Query= MSMg01no334_d14.b1 MSMg01no334_d14.b1 CHROMAT_FILE:
MSMg01no334_d14.b1 PHD_FILE: MSMg01no334_d14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:35 2005
         (693 letters)



>mm_chr18_50995460_50996552
          Length = 1093

 Score = 1085 bits (561), Expect = 0.0
 Identities = 679/775 (87%), Gaps = 87/775 (11%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaaatgtcacacaattgcagaaactatctgcagctggcaaattcaatcacattc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 118 gaattccaaatgtcacacaattgcagaaactatctgcagctggcaaattcaatgacattc 177

                                                                       
Query: 65  acaaaacaaatcagagtcaactgttcttgacaatccaaggatccctatatcccatacctg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 acaaaacaaatcagagtcaactgttcttgacaatccaaggatccctatatcccatacctg 237

                                                                       
Query: 125 ggatcaaaacaaaacaaaacatattct--------------------------------- 151
           |||||||||||||||||||||||||||                                 
Sbjct: 238 ggatcaaaacaaaacaaaacatattcttataacatttccatgttttgttttaaataagaa 297

                                                                       
Query: 152 --------------------------------------------cacaaggtaatttctg 167
                                                       ||||||||||||||||
Sbjct: 298 accaaaacttaaaaattgtgacaatgtagtctaaaaaaaataaacacaaggtaatttctg 357

                                                                       
Query: 168 tggaacatgagttagaattgctcataattcctgtgggtttacaacgattctcaaaggcaa 227
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 358 tggaacatgagttagaattgctcataattcctgtgggtttacaacgattctcaaaggaaa 417

                                                                       
Query: 228 tgttagtcaaagatgggaaagaaaagggtgtatgatgaactc----------ggcttaaa 277
           ||||||||||||||||||||||||||||| ||||||||||||          ||||||||
Sbjct: 418 tgttagtcaaagatgggaaagaaaagggtatatgatgaactcttaaaagatgggcttaaa 477

                                                                       
Query: 278 agaaggaagcaaaaaaaaaatgccatcacttctgtcagtaccaaagctaggaacgagaaa 337
           |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 478 agaaggtagcaaaaaaaaaatgccatcacttctgtcagtaccaaagctaggaacaagaaa 537

                                                                       
Query: 338 tagtatcaccatcaaaactttcgatatttgctgttcgttgaagaaaagtggctcagaagg 397
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 tagtatcaccatcaaaactttcgatatttgctgttcgttgaagaaaagtggctcagaagg 597

                                                                       
Query: 398 gaaatagtacgagactgcctacagatccagctttcctgggagcataaatttagcaacata 457
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 gaaatagtatgagactgcctacagatccagctttcctgggagcataaatttagcaacata 657

                                                                       
Query: 458 aaatccttgatgctataaaaactttttggaacatttactcttactagaggaaacctatgc 517
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| 
Sbjct: 658 aaatccttgatgctataaaaactttttggaacatttactcttagtagaggaaacctatga 717

                                                                       
Query: 518 ctatgttgatagagatagaccccagaacgtgagcctcaagattcctgtgcaattggtctt 577
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ctatgttgatagagatagaccccagaacgtgagcctcaagattcctgtgcaattggtctt 777

                                                                       
Query: 578 tgggccacataccacaagcatttgaggagtcaactctgcactcacagaacagaaacacct 637
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tgggccacataccacaagcatttgaggagtcaactctgcactcacagaacagaaacacct 837

                                                                  
Query: 638 tcctttttacatgaagtcctacttgacattgaagtgtcacttagatacataaggc 692
           |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 838 tcctttttacatgaagtcctacttgacactgaagtgtcacttagatacataaggc 892


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 693
Length of database: 1093
Length adjustment: 10
Effective length of query: 683
Effective length of database: 1083
Effective search space:   739689
Effective search space used:   739689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)