Query= MSMg01no335_j10.b1 MSMg01no335_j10.b1 CHROMAT_FILE:
MSMg01no335_j10.b1 PHD_FILE: MSMg01no335_j10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:24 2005
(665 letters)
>mm_chr18_72443805_72444867
Length = 1063
Score = 1208 bits (625), Expect = 0.0
Identities = 653/663 (98%), Gaps = 4/663 (0%)
Strand = Plus / Minus
Query: 4 ggaattctctatgtctctacctattatttgagtctttagtcatgggtaattagtaagtgt 63
||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 863 ggaattctc--tgtcactacctattatttgagtctttagtcatgggtaattagtaagtgt 806
Query: 64 tgaccctcattttgatttatcctgaattccacaggcttctaatgctaattttctgtatta 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tgaccctcattttgatttatcctgaattccacaggcttctaatgctaattttctgtatta 746
Query: 124 ggaaattatatgccaccaggacaaatgctttgccgagaaagacagttcttcttgactttg 183
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 745 ggaaattatatgccaccaggacaaatgctttgcccagaaagacagttcttcttgactttg 686
Query: 184 gtaatataagacccttgatgggagaggcatagtaatgtgtgaattttgctgacaaaaata 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gtaatataagacccttgatgggagaggcatagtaatgtgtgaattttgctgacaaaaata 626
Query: 244 tggtattgacttactattccaaaacccagagacattcattcatctattaagaaagaaatt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tggtattgacttactattccaaaacccagagacattcattcatctattaagaaagaaatt 566
Query: 304 acagaattaggaatgtagcattttcatgaagtaaatagatatgggcattctagagtaatc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 acagaattaggaatgtagcattttcatgaagtaaatagatatgggcattctagagtaatc 506
Query: 364 atagcttctccatgtcagattaactgcaattatggaaaatgctgtcagcaaaatgaagag 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 505 atagcttctccatgtcagattaactgcaattatggaaaatgctgtcagcaaaatggagag 446
Query: 424 cagccattctcttaggtaagtaagtggccgaaatacacttggaaataaaatgagaaaaat 483
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 445 cagccattctcttaggtaagtaagtggccaaaatacacttggaaataaaatgagaaaaat 386
Query: 484 tatattcattgattctgtctatctctttctcctcttttct-cttgacacagatttataaa 542
|||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 385 tatagtcattgattctgtctatctctttctcctctttt-tacttgacacagatttataaa 327
Query: 543 atatttctgtagcatcaaacattctacattcatatttctgcaactgtgaacttggtgaag 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 atatttctgtagcatcaaacattctacattcatatttctgcaactgtgaacttggtgaag 267
Query: 603 gaagaaatcctgctgagattacagagagcaaactttgttacgctattactttaacaccaa 662
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 266 gaagaaatcctgctgagattacagagagcaaactttgttacactattactttaacaccaa 207
Query: 663 tgc 665
|||
Sbjct: 206 tgc 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1063
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1053
Effective search space: 689715
Effective search space used: 689715
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no335_j10.g1 MSMg01no335_j10.g1 CHROMAT_FILE:
MSMg01no335_j10.g1 PHD_FILE: MSMg01no335_j10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:24 2005
(622 letters)
>mm_chr18_72257585_72258606
Length = 1022
Score = 1131 bits (585), Expect = 0.0
Identities = 612/621 (98%), Gaps = 1/621 (0%)
Strand = Plus / Plus
Query: 1 atagagaaggcaggaaaaatcattaaagattgaaaaatagtattataaattaataattta 60
|||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 200 atagagaaggtaggaaaaatcatttaagattgaaaaatagtattataaattaataattta 259
Query: 61 aaagctactaaaatataatgacattatagcgaagaaaataagaaacatagaacaacggta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 aaagctactaaaatataatgacattatagcgaagaaaataagaaacatagaacaacggta 319
Query: 121 tagaacagaacatagcaacagagcacaatcctgatgaatactccactgcctgtttgcata 180
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tagaacagaacatagcaacatagcacaatcctgatgaatactccactgcctgtttgcata 379
Query: 181 tggaatttcaattgagaatgtgctttgttttgcctctctgttttgcatcttaaggagccg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tggaatttcaattgagaatgtgctttgttttgcctctctgttttgcatcttaaggagccg 439
Query: 241 taaagaaattgaaataatcaaaagaaaatagtgttgtttcacttattgcaatctttggat 300
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 440 taaagaaattgaaataatcaaaagaaaatagtgttggttcacttattgcaatctttggat 499
Query: 301 tttaattttgtgtcagttggcattctgccccacgttggtttcatgctacaatggaagagt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tttaattttgtgtcagttggcattctgccccacgttggtttcatgctacaatggaagagt 559
Query: 361 taagtaattgggatggagaccagatggttcccaaagctaaaattatagattatctgacca 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 560 taagtaattgggatggagaccagatggttcccaaagctaaaattatagattatctgtcca 619
Query: 421 ctcaaaaaaa-gtttgctgacaatagtttaaaaagaatttacatttttttatcacatact 479
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ttcaaaaaaaagtttgctgacaatagtttaaaaagaatttacatttttttatcacatact 679
Query: 480 acattcctggagagactatgaattctaacagtctttttttcatggtggctatcaatctat 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 acattcctggagagactatgaattctaacagtctttttttcatggtggctatcaatctat 739
Query: 540 cttccaacctaacaatcgagaacctatatttttgactccagtcttcctatgctctggaat 599
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 cttccaacctaacaattgagaacctatatttttgactccagtcttcctatgctctggaat 799
Query: 600 aataataattttattataagc 620
||||||||||||||| |||||
Sbjct: 800 aataataattttattgtaagc 820
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1022
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1012
Effective search space: 619344
Effective search space used: 619344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
